estd206 (Nagirnaja et al. 2014)
- Organism:
- Human
- Study Type:
- Case-Control
- Submitter:
- Liina Nagirnaja
- Description:
- The study aimed to determine the contribution of copy number variants in the genetic etiology of recurrent miscarriage (RM; defined as =3 consecutive miscarriages before gestational week 22). See Variant Summary counts for estd206 in dbVar Variant Summary.
- Publication(s):
- Nagirnaja et al. 2014
Detailed Information: Download 513 Variant Regions, Download 915 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI36 (hg18)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 37 | 51 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 47 | 79 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 37 | 74 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 32 | 60 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 21 | 41 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 31 | 83 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 21 | 34 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 28 | 87 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 23 | 32 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 25 | 40 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 29 | 52 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 26 | 48 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 21 | 32 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 16 | 28 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 19 | 37 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 21 | 30 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 9 | 12 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 7 | 18 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 9 | 10 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 10 | 12 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 14 | 15 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 8 | 12 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 17 | 19 | Remapped | NC_000023.11 |
| NT_187515.1 | Chr1|NT_187515.1 | 1 | 1 | Remapped | NT_187515.1 |
| NW_018654708.1 | Chr1|NW_018654708.1 | 1 | 1 | Remapped | NW_018654708.1 |
| NW_019805488.1 | Chr3|NW_019805488.1 | 1 | 1 | Remapped | NW_019805488.1 |
| NW_019805489.1 | Chr3|NW_019805489.1 | 2 | 8 | Remapped | NW_019805489.1 |
| NT_187542.1 | Chr4|NT_187542.1 | 1 | 1 | Remapped | NT_187542.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 1 | 1 | Remapped | NW_003315915.1 |
| NW_016107297.1 | Chr5|NW_016107297.1 | 1 | 1 | Remapped | NW_016107297.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 1 | 1 | Remapped | NW_016107298.1 |
| NT_167246.2 | Chr6|NT_167246.2 | 7 | 26 | Remapped | NT_167246.2 |
| NT_167247.2 | Chr6|NT_167247.2 | 4 | 7 | Remapped | NT_167247.2 |
| NT_167249.2 | Chr6|NT_167249.2 | 6 | 15 | Remapped | NT_167249.2 |
| NT_167245.2 | Chr6|NT_167245.2 | 2 | 1 | Remapped | NT_167245.2 |
| NT_187562.1 | Chr7|NT_187562.1 | 1 | 1 | Remapped | NT_187562.1 |
| NW_018654716.1 | Chr8|NW_018654716.1 | 1 | 1 | Remapped | NW_018654716.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 1 | 1 | Remapped | NW_018654717.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 2 | 3 | Remapped | NW_013171806.1 |
| NT_187586.1 | Chr11|NT_187586.1 | 1 | 1 | Remapped | NT_187586.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 2 | 5 | Remapped | NW_019805495.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 2 | 8 | Remapped | NT_187587.1 |
| NW_003315939.2 | Chr12|NW_003315939.2 | 1 | 1 | Remapped | NW_003315939.2 |
| NT_187600.1 | Chr14|NT_187600.1 | 1 | 3 | Remapped | NT_187600.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 1 | 1 | Remapped | NT_187660.1 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 1 | 1 | Remapped | NW_011332701.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 1 | 1 | Remapped | NT_187607.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 2 | 2 | Remapped | NW_017852933.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 1 | 1 | Remapped | NT_187661.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 1 | 1 | Remapped | NT_187614.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 2 | 6 | Remapped | NT_187693.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 1 | 1 | Remapped | NW_003315962.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 38 | 52 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 47 | 79 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 37 | 74 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 32 | 60 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 21 | 41 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 31 | 83 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 21 | 34 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 28 | 87 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 23 | 32 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 25 | 40 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 30 | 53 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 26 | 48 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 21 | 32 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 16 | 28 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 19 | 36 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 21 | 30 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 9 | 12 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 7 | 18 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 9 | 10 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 10 | 12 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 14 | 15 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 8 | 12 | Remapped | NC_000022.10 |
| NC_000023.10 | ChrX | 17 | 19 | Remapped | NC_000023.10 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 3 | 5 | Remapped | NW_003871055.3 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 1 | 1 | Remapped | NW_003315915.1 |
| NT_167245.1 | Chr6|NT_167245.1 | 2 | 1 | Remapped | NT_167245.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 10 | 29 | Remapped | NT_167246.1 |
| NT_167247.1 | Chr6|NT_167247.1 | 4 | 7 | Remapped | NT_167247.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 6 | 15 | Remapped | NT_167249.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 1 | 1 | Remapped | NW_003571040.1 |
| NW_003315923.1 | Chr8|NW_003315923.1 | 1 | 2 | Remapped | NW_003315923.1 |
| NW_003315924.1 | Chr8|NW_003315924.1 | 1 | 1 | Remapped | NW_003315924.1 |
| NW_003315932.1 | Chr10|NW_003315932.1 | 1 | 1 | Remapped | NW_003315932.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 2 | 7 | Remapped | NW_003871068.1 |
| NW_003571046.1 | Chr11|NW_003571046.1 | 1 | 1 | Remapped | NW_003571046.1 |
| NW_003315939.1 | Chr12|NW_003315939.1 | 1 | 1 | Remapped | NW_003315939.1 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 1 | 3 | Remapped | NW_004166863.1 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 1 | 1 | Remapped | NW_003315949.1 |
| NW_003315950.2 | Chr17|NW_003315950.2 | 1 | 1 | Remapped | NW_003315950.2 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 1 | 1 | Remapped | NW_003315962.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 2 | 3 | Remapped | NW_003571053.2 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 2 | 6 | Remapped | NW_004166865.1 |
| NW_003571063.2 | Chr20|NW_003571063.2 | 0 | 1 | Remapped | NW_003571063.2 |
| NW_003871103.3 | ChrX|NW_003871103.3 | 2 | 2 | Remapped | NW_003871103.3 |
| NW_004070880.2 | ChrX|NW_004070880.2 | 1 | 1 | Remapped | NW_004070880.2 |
| NW_004070887.1 | ChrX|NW_004070887.1 | 1 | 1 | Remapped | NW_004070887.1 |
| NW_004070890.2 | ChrX|NW_004070890.2 | 1 | 1 | Remapped | NW_004070890.2 |
| NW_004070892.1 | ChrX|NW_004070892.1 | 1 | 1 | Remapped | NW_004070892.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.9 | Chr1 | 38 | 52 | Submitted | NC_000001.9 |
| NC_000002.10 | Chr2 | 47 | 79 | Submitted | NC_000002.10 |
| NC_000003.10 | Chr3 | 37 | 74 | Submitted | NC_000003.10 |
| NC_000004.10 | Chr4 | 32 | 60 | Submitted | NC_000004.10 |
| NC_000005.8 | Chr5 | 21 | 41 | Submitted | NC_000005.8 |
| NC_000006.10 | Chr6 | 31 | 83 | Submitted | NC_000006.10 |
| NC_000007.12 | Chr7 | 21 | 34 | Submitted | NC_000007.12 |
| NC_000008.9 | Chr8 | 28 | 87 | Submitted | NC_000008.9 |
| NC_000009.10 | Chr9 | 23 | 32 | Submitted | NC_000009.10 |
| NC_000010.9 | Chr10 | 25 | 40 | Submitted | NC_000010.9 |
| NC_000011.8 | Chr11 | 31 | 54 | Submitted | NC_000011.8 |
| NC_000012.10 | Chr12 | 26 | 48 | Submitted | NC_000012.10 |
| NC_000013.9 | Chr13 | 21 | 32 | Submitted | NC_000013.9 |
| NC_000014.7 | Chr14 | 16 | 28 | Submitted | NC_000014.7 |
| NC_000015.8 | Chr15 | 19 | 37 | Submitted | NC_000015.8 |
| NC_000016.8 | Chr16 | 21 | 30 | Submitted | NC_000016.8 |
| NC_000017.9 | Chr17 | 9 | 12 | Submitted | NC_000017.9 |
| NC_000018.8 | Chr18 | 7 | 18 | Submitted | NC_000018.8 |
| NC_000019.8 | Chr19 | 11 | 16 | Submitted | NC_000019.8 |
| NC_000020.9 | Chr20 | 10 | 12 | Submitted | NC_000020.9 |
| NC_000021.7 | Chr21 | 14 | 15 | Submitted | NC_000021.7 |
| NC_000022.9 | Chr22 | 8 | 12 | Submitted | NC_000022.9 |
| NC_000023.9 | ChrX | 17 | 19 | Submitted | NC_000023.9 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 38 | 34 | 1 | 0 | 0 | 3 | 52 | 46 | 1 | 0 | 0 | 5 |
| NC_000002.10 | Chr2 | 47 | 44 | 1 | 2 | 0 | 0 | 79 | 76 | 1 | 2 | 0 | 0 |
| NC_000003.10 | Chr3 | 37 | 37 | 0 | 0 | 0 | 0 | 74 | 74 | 0 | 0 | 0 | 0 |
| NC_000004.10 | Chr4 | 32 | 31 | 0 | 0 | 0 | 1 | 60 | 59 | 0 | 0 | 0 | 1 |
| NC_000005.8 | Chr5 | 21 | 21 | 0 | 0 | 0 | 0 | 41 | 41 | 0 | 0 | 0 | 0 |
| NC_000006.10 | Chr6 | 31 | 19 | 0 | 0 | 0 | 12 | 83 | 47 | 0 | 0 | 0 | 36 |
| NC_000007.12 | Chr7 | 21 | 20 | 0 | 0 | 0 | 1 | 34 | 33 | 0 | 0 | 0 | 1 |
| NC_000008.9 | Chr8 | 28 | 23 | 0 | 3 | 0 | 2 | 87 | 79 | 0 | 5 | 0 | 3 |
| NC_000009.10 | Chr9 | 23 | 22 | 0 | 1 | 0 | 0 | 32 | 31 | 0 | 1 | 0 | 0 |
| NC_000010.9 | Chr10 | 25 | 21 | 0 | 1 | 0 | 3 | 40 | 31 | 0 | 1 | 0 | 8 |
| NC_000011.8 | Chr11 | 31 | 28 | 1 | 2 | 0 | 0 | 54 | 51 | 1 | 2 | 0 | 0 |
| NC_000012.10 | Chr12 | 26 | 25 | 0 | 0 | 0 | 1 | 48 | 47 | 0 | 0 | 0 | 1 |
| NC_000013.9 | Chr13 | 21 | 21 | 0 | 0 | 0 | 0 | 32 | 32 | 0 | 0 | 0 | 0 |
| NC_000014.7 | Chr14 | 16 | 14 | 1 | 0 | 0 | 1 | 28 | 23 | 2 | 0 | 0 | 3 |
| NC_000015.8 | Chr15 | 19 | 17 | 0 | 2 | 0 | 0 | 37 | 27 | 1 | 8 | 1 | 0 |
| NC_000016.8 | Chr16 | 21 | 21 | 0 | 0 | 0 | 0 | 30 | 30 | 0 | 0 | 0 | 0 |
| NC_000017.9 | Chr17 | 9 | 6 | 0 | 1 | 0 | 2 | 12 | 8 | 1 | 1 | 0 | 2 |
| NC_000018.8 | Chr18 | 7 | 7 | 0 | 0 | 0 | 0 | 18 | 18 | 0 | 0 | 0 | 0 |
| NC_000019.8 | Chr19 | 11 | 6 | 2 | 0 | 0 | 3 | 16 | 6 | 6 | 0 | 0 | 4 |
| NC_000020.9 | Chr20 | 10 | 9 | 0 | 1 | 0 | 0 | 12 | 10 | 0 | 1 | 0 | 1 |
| NC_000021.7 | Chr21 | 14 | 14 | 0 | 0 | 0 | 0 | 15 | 15 | 0 | 0 | 0 | 0 |
| NC_000022.9 | Chr22 | 8 | 8 | 0 | 0 | 0 | 0 | 12 | 12 | 0 | 0 | 0 | 0 |
| NC_000023.9 | ChrX | 17 | 11 | 0 | 0 | 0 | 6 | 19 | 13 | 0 | 0 | 0 | 6 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 38 | 30 | 4 | 1 | 1 | 2 | 52 | 42 | 5 | 2 | 1 | 2 |
| NC_000002.10 | Chr2 | 47 | 43 | 2 | 2 | 0 | 0 | 79 | 73 | 4 | 2 | 0 | 0 |
| NC_000003.10 | Chr3 | 37 | 32 | 2 | 0 | 0 | 3 | 74 | 62 | 3 | 0 | 0 | 9 |
| NC_000004.10 | Chr4 | 32 | 30 | 0 | 0 | 0 | 2 | 60 | 58 | 0 | 0 | 0 | 2 |
| NC_000005.8 | Chr5 | 21 | 19 | 0 | 0 | 0 | 2 | 41 | 39 | 0 | 0 | 0 | 2 |
| NC_000006.10 | Chr6 | 31 | 18 | 0 | 1 | 0 | 12 | 83 | 46 | 0 | 1 | 0 | 36 |
| NC_000007.12 | Chr7 | 21 | 20 | 0 | 0 | 0 | 1 | 34 | 33 | 0 | 0 | 0 | 1 |
| NC_000008.9 | Chr8 | 28 | 22 | 1 | 3 | 0 | 2 | 87 | 78 | 1 | 6 | 0 | 2 |
| NC_000009.10 | Chr9 | 23 | 22 | 0 | 1 | 0 | 0 | 32 | 31 | 0 | 1 | 0 | 0 |
| NC_000010.9 | Chr10 | 25 | 20 | 2 | 1 | 0 | 2 | 40 | 33 | 2 | 2 | 0 | 3 |
| NC_000011.8 | Chr11 | 31 | 24 | 2 | 0 | 2 | 3 | 54 | 44 | 2 | 0 | 2 | 6 |
| NC_000012.10 | Chr12 | 26 | 23 | 0 | 0 | 0 | 3 | 48 | 39 | 0 | 0 | 0 | 9 |
| NC_000013.9 | Chr13 | 21 | 20 | 0 | 1 | 0 | 0 | 32 | 31 | 0 | 1 | 0 | 0 |
| NC_000014.7 | Chr14 | 16 | 11 | 2 | 2 | 0 | 1 | 28 | 20 | 2 | 3 | 0 | 3 |
| NC_000015.8 | Chr15 | 19 | 15 | 0 | 2 | 0 | 2 | 37 | 25 | 1 | 9 | 0 | 2 |
| NC_000016.8 | Chr16 | 21 | 18 | 0 | 0 | 0 | 3 | 30 | 27 | 0 | 0 | 0 | 3 |
| NC_000017.9 | Chr17 | 9 | 6 | 2 | 0 | 0 | 1 | 12 | 8 | 3 | 0 | 0 | 1 |
| NC_000018.8 | Chr18 | 7 | 6 | 1 | 0 | 0 | 0 | 18 | 17 | 1 | 0 | 0 | 0 |
| NC_000019.8 | Chr19 | 11 | 9 | 1 | 0 | 0 | 1 | 16 | 14 | 1 | 0 | 0 | 1 |
| NC_000020.9 | Chr20 | 10 | 10 | 0 | 0 | 0 | 0 | 12 | 12 | 0 | 0 | 0 | 0 |
| NC_000021.7 | Chr21 | 14 | 13 | 1 | 0 | 0 | 0 | 15 | 14 | 1 | 0 | 0 | 0 |
| NC_000022.9 | Chr22 | 8 | 7 | 1 | 0 | 0 | 0 | 12 | 11 | 1 | 0 | 0 | 0 |
| NC_000023.9 | ChrX | 17 | 12 | 4 | 1 | 0 | 0 | 19 | 14 | 4 | 1 | 0 | 0 |
Samplesets
Number of Samplesets: 2
- Sampleset ID:
- 1
- Name:
- RM
- Sampleset Type:
- Case
- Description:
- Unexplained recurrent miscarriage (RM) cases with =3 consecutive miscarriage before gestational week 22. All recruited patients had a normal karyotype tested from peripheral blood lymphocyte cultures and known clinical risk factors of RM have been excluded.
- Size:
- 43
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Recurrent miscarriage
| Sample ID | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|
| RM-M16 | RM-M16 | Male | Estonia | Recurrent miscarriage |
| RM-F7 | RM-F7 | Female | Estonia | Recurrent miscarriage |
| RM-F12 | RM-F12 | Female | Estonia | Recurrent miscarriage |
| RM-M4 | RM-M4 | Male | Estonia | Recurrent miscarriage |
| RM-F5 | RM-F5 | Female | Estonia | Recurrent miscarriage |
| RM-F2 | RM-F2 | Female | Estonia | Recurrent miscarriage |
| RM-F22 | RM-F22 | Female | Estonia | Recurrent miscarriage |
| RM-F10 | RM-F10 | Female | Estonia | Recurrent miscarriage |
| RM-M8 | RM-M8 | Male | Estonia | Recurrent miscarriage |
| RM-F14 | RM-F14 | Female | Estonia | Recurrent miscarriage |
| RM-F20 | RM-F20 | Female | Estonia | Recurrent miscarriage |
| RM-F27 | RM-F27 | Female | Estonia | Recurrent miscarriage |
| RM-M12 | RM-M12 | Male | Estonia | Recurrent miscarriage |
| RM-M1 | RM-M1 | Male | Estonia | Recurrent miscarriage |
| RM-F6 | RM-F6 | Female | Estonia | Recurrent miscarriage |
| RM-F23 | RM-F23 | Female | Estonia | Recurrent miscarriage |
| RM-M14 | RM-M14 | Male | Estonia | Recurrent miscarriage |
| RM-F13 | RM-F13 | Female | Estonia | Recurrent miscarriage |
| RM-F19 | RM-F19 | Female | Estonia | Recurrent miscarriage |
| RM-F25 | RM-F25 | Female | Estonia | Recurrent miscarriage |
| RM-M11 | RM-M11 | Male | Estonia | Recurrent miscarriage |
| RM-F8 | RM-F8 | Female | Estonia | Recurrent miscarriage |
| RM-M7 | RM-M7 | Male | Estonia | Recurrent miscarriage |
| RM-M15 | RM-M15 | Male | Estonia | Recurrent miscarriage |
| RM-F18 | RM-F18 | Female | Estonia | Recurrent miscarriage |
| RM-F26 | RM-F26 | Female | Estonia | Recurrent miscarriage |
| RM-M5 | RM-M5 | Male | Estonia | Recurrent miscarriage |
| RM-F15 | RM-F15 | Female | Estonia | Recurrent miscarriage |
| RM-F17 | RM-F17 | Female | Estonia | Recurrent miscarriage |
| RM-M13 | RM-M13 | Male | Estonia | Recurrent miscarriage |
| RM-M6 | RM-M6 | Male | Estonia | Recurrent miscarriage |
| RM-F24 | RM-F24 | Female | Estonia | Recurrent miscarriage |
| RM-M10 | RM-M10 | Male | Estonia | Recurrent miscarriage |
| RM-M3 | RM-M3 | Male | Estonia | Recurrent miscarriage |
| RM-F3 | RM-F3 | Female | Estonia | Recurrent miscarriage |
| RM-F4 | RM-F4 | Female | Estonia | Recurrent miscarriage |
| RM-M2 | RM-M2 | Male | Estonia | Recurrent miscarriage |
| RM-F16 | RM-F16 | Female | Estonia | Recurrent miscarriage |
| RM-F1 | RM-F1 | Female | Estonia | Recurrent miscarriage |
| RM-F21 | RM-F21 | Female | Estonia | Recurrent miscarriage |
| RM-F11 | RM-F11 | Female | Estonia | Recurrent miscarriage |
| RM-M9 | RM-M9 | Male | Estonia | Recurrent miscarriage |
| RM-F9 | RM-F9 | Female | Estonia | Recurrent miscarriage |
- Sampleset ID:
- 2
- Name:
- FFC
- Sampleset Type:
- Control
- Description:
- Fertile female controls (FFC) with at least 3 successful pregnancies ending with live birth and with no history of miscarriages at the time of recruitment.
- Size:
- 27
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Healthy individuals
- Sex:
- Female
| Sample ID | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|
| FFC-34 | FFC-34 | Female | Estonia | Healthy individuals |
| FFC-25 | FFC-25 | Female | Estonia | Healthy individuals |
| FFC-146 | FFC-146 | Female | Estonia | Healthy individuals |
| FFC-108 | FFC-108 | Female | Estonia | Healthy individuals |
| FFC-110 | FFC-110 | Female | Estonia | Healthy individuals |
| FFC-90 | FFC-90 | Female | Estonia | Healthy individuals |
| FFC-91 | FFC-91 | Female | Estonia | Healthy individuals |
| FFC-94 | FFC-94 | Female | Estonia | Healthy individuals |
| FFC-93 | FFC-93 | Female | Estonia | Healthy individuals |
| FFC-95 | FFC-95 | Female | Estonia | Healthy individuals |
| FFC-132 | FFC-132 | Female | Estonia | Healthy individuals |
| FFC-18 | FFC-18 | Female | Estonia | Healthy individuals |
| FFC-101 | FFC-101 | Female | Estonia | Healthy individuals |
| FFC-104 | FFC-104 | Female | Estonia | Healthy individuals |
| FFC-131 | FFC-131 | Female | Estonia | Healthy individuals |
| FFC-84 | FFC-84 | Female | Estonia | Healthy individuals |
| FFC-26 | FFC-26 | Female | Estonia | Healthy individuals |
| FFC-126 | FFC-126 | Female | Estonia | Healthy individuals |
| FFC-63 | FFC-63 | Female | Estonia | Healthy individuals |
| FFC-136 | FFC-136 | Female | Estonia | Healthy individuals |
| FFC-80 | FFC-80 | Female | Estonia | Healthy individuals |
| FFC-121 | FFC-121 | Female | Estonia | Healthy individuals |
| FFC-117 | FFC-117 | Female | Estonia | Healthy individuals |
| FFC-145 | FFC-145 | Female | Estonia | Healthy individuals |
| FFC-148 | FFC-148 | Female | Estonia | Healthy individuals |
| FFC-38 | FFC-38 | Female | Estonia | Healthy individuals |
| FFC-129 | FFC-129 | Female | Estonia | Healthy individuals |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Number of Variant Calls |
|---|---|---|---|---|---|
| 1 | Discovery | SNP array | Probe signal intensity | Illumina Human370CNV-Quad | 915 |
| 2 | Validation | qPCR | Other | Applied Biosystems pre-designed TaqMan Copy Number assays | 9 |
| 3 | Validation | qPCR | Other | Custom DNA primers and Applied Biosystems pre-designed TaqMan Copy Number reference assay | 0 |
Validations
| Experiment ID | Method | Analysis | Platform | Number of Variant Calls Validated |
|---|---|---|---|---|
| 2 | qPCR | Other | Applied Biosystems pre-designed TaqMan Copy Number assays | 9 |
| 3 | qPCR | Other | Custom DNA primers and Applied Biosystems pre-designed TaqMan Copy Number reference assay | 0 |