Genome assembly ASM4609789v1
- NCBI RefSeq assembly
- GCF_046097895.1
- Submitted GenBank assembly
- GCA_046097895.1
- Taxon
- Klebsiella pneumoniae
- Strain
- JXkp20
- WGS project
- JBJPHZ01
- Submitter
- First Affiliated Hospital of Nanchang University, Nanchang University, Nanchang
- Date
- Dec 15, 2024
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 5.5 Mb | 5.5 Mb |
Total ungapped length | 5.5 Mb | 5.5 Mb |
Number of contigs | 86 | 86 |
Contig N50 | 321.1 kb | 321.1 kb |
Contig L50 | 7 | 7 |
GC percent | 57 | 57 |
Genome coverage | 398.0x | 398.0x |
Assembly level | Contig | Contig |
View sequences | view RefSeq sequences |
Sample details
- BioSample ID
- SAMN45176933
- Description
- Microbe sample from Klebsiella pneumoniae
- Submitter
- First Affiliated Hospital of Nanchang University, Nanchang University, Nanchang
- Strain
- JXkp20
- Host
- Homo sapiens
- Isolation source
- sputum
- Collection date
- 2020/2023
- Geographic location
- China:Nanchang
- Sample type
- cell culture
- Sample name
- JXkp20
- Models
- Microbe, viral or environmental
- Package
- Microbe.1.0
- Submission date
- 2024-12-05T00:27:05.850
- Publication date
- 2024-12-05T00:00:00.000
- Last updated
- 2024-12-05T01:01:05.353
Assembly methods
- Sequencing technology
- DNBSEQ-T7
- Comment
- The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
- Assembly method
- Velvet v. 1.2.10
Additional genomes
Browse all Klebsiella pneumoniae genomes (80346)BioProject
PRJNA1194301Klebsiella pneumoniae strain:JXkp20 Genome sequencing
Pathogen Detection Resource
Annotation details
RefSeq | GenBank | |
---|---|---|
Provider | NCBI RefSeq | NCBI |
Name | GCF_046097895.1-RS_2024_12_16 | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) |
Date | Dec 16, 2024 | Dec 10, 2024 |
Genes | 5,449 | 5,451 |
Protein-coding | 5,204 | 5,222 |
Software version | 6.9 | 6.9 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
CheckM analysis (v1.2.3)
Completeness: 98.49% (40th Percentile)
Contamination: 0.89%
Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Klebsiella pneumoniae CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).
Taxonomy check
- Taxonomy check status
- OK
- Best match status
- species_match
- Submitted organism name
- Klebsiella pneumoniae
- Submitted species name
- Klebsiella pneumoniae
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | GCA_000742135.1 | GCA_000742135.1 |
Organism name | Klebsiella pneumoniae | Klebsiella pneumoniae |
Type category | type | type |
ANI | 99.2% | 99.2% |
Assembly coverage | 88.07% | 88.07% |
Type assembly coverage | 86.88% | 86.88% |
Chromosomes
Note: This contig-level genome assembly includes 86 contigs and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_046097895.1 | GCF_046097895.1 | ASM4609789v1 | Contig | Dec 15, 2024 |