Genome assembly ASM4609789v1

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NCBI RefSeq assembly
GCF_046097895.1
Submitted GenBank assembly
GCA_046097895.1
Taxon
Klebsiella pneumoniae
Strain
JXkp20
WGS project
JBJPHZ01
Submitter
First Affiliated Hospital of Nanchang University, Nanchang University, Nanchang
Date
Dec 15, 2024

Assembly statistics

RefSeqGenBank
Genome size5.5 Mb5.5 Mb
Total ungapped length5.5 Mb5.5 Mb
Number of contigs8686
Contig N50321.1 kb321.1 kb
Contig L5077
GC percent5757
Genome coverage398.0x398.0x
Assembly levelContigContig
View sequencesview RefSeq sequences

Sample details

BioSample ID
SAMN45176933
Description
Microbe sample from Klebsiella pneumoniae
Submitter
First Affiliated Hospital of Nanchang University, Nanchang University, Nanchang
Strain
JXkp20
Host
Homo sapiens
Isolation source
sputum
Collection date
2020/2023
Geographic location
China:Nanchang
Sample type
cell culture
Sample name
JXkp20
Models
Microbe, viral or environmental
Package
Microbe.1.0
Submission date
2024-12-05T00:27:05.850
Publication date
2024-12-05T00:00:00.000
Last updated
2024-12-05T01:01:05.353

Assembly methods

Sequencing technology
DNBSEQ-T7
Comment
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Assembly method
Velvet v. 1.2.10

Additional genomes

Browse all Klebsiella pneumoniae genomes (80346)

BioProject

PRJNA1194301

Klebsiella pneumoniae strain:JXkp20 Genome sequencing

Pathogen Detection Resource

Annotation details

RefSeqGenBank
ProviderNCBI RefSeqNCBI
NameGCF_046097895.1-RS_2024_12_16NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
DateDec 16, 2024Dec 10, 2024
Genes5,4495,451
Protein-coding5,2045,222
Software version6.96.9

About PGAP

The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.

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Quality analysis

CheckM analysis (v1.2.3)

Completeness: 98.49% (40th Percentile)

Contamination: 0.89%

Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Klebsiella pneumoniae CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).

Taxonomy check

Taxonomy check status
OK
Best match status
species_match
Submitted organism name
Klebsiella pneumoniae
Submitted species name
Klebsiella pneumoniae

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assemblyGCA_000742135.1GCA_000742135.1
Organism nameKlebsiella pneumoniaeKlebsiella pneumoniae
Type categorytypetype
ANI99.2%99.2%
Assembly coverage88.07%88.07%
Type assembly coverage86.88%86.88%

Chromosomes

Note: This contig-level genome assembly includes 86 contigs and no assembled chromosomes.

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_046097895.1GCF_046097895.1ASM4609789v1ContigDec 15, 2024