Genome assembly ASM4001531v1
- NCBI RefSeq assembly
- GCF_040015315.1
- Submitted GenBank assembly
- GCA_040015315.1
- Taxon
- Enterobacter asburiae
- Strain
- 4151
- WGS project
- JBDYIQ01
- Submitter
- Yongchuan Hospital of Chongqing Medical University
- Date
- Jun 2, 2024
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 4.6 Mb | 4.6 Mb |
Total ungapped length | 4.6 Mb | 4.6 Mb |
Number of chromosomes | 10 | 10 |
Number of scaffolds | 27 | 27 |
Scaffold N50 | 2.6 Mb | 2.6 Mb |
Scaffold L50 | 1 | 1 |
Number of contigs | 27 | 27 |
Contig N50 | 2.6 Mb | 2.6 Mb |
Contig L50 | 1 | 1 |
GC percent | 56 | 56 |
Genome coverage | 265.6x | 265.6x |
Assembly level | Scaffold | Scaffold |
View sequences | view RefSeq sequences |
Sample details
- BioSample ID
- SAMN41503379
- Description
- 4151
- Submitter
- Yongchuan Hospital of Chongqing Medical University
- Strain
- 4151
- Collected by
- Pediatric Department
- Collection date
- Nov 28, 2022
- Geographic location
- China:Chongqing
- Host
- Homo sapiens
- Host disease
- not collected
- Isolation source
- sputum
- Latitude and longitude
- 29.44 N 106.89 E
- Host sex
- male
- Sample name
- Enterobacter cloacae complex sp. strain 4151
- SRA
- SRS21412115
- Models
- Pathogen.cl
- Package
- Pathogen.cl.1.0
- Submission date
- 2024-05-23T03:54:08.070
- Publication date
- 2024-05-23T00:00:00.000
- Last updated
- 2024-05-28T14:56:40.925
Assembly methods
- Sequencing technology
- Illumina NovaSeq
- Comment
- The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
- Assembly method
- SPAdes v. v3.15.5
Additional genomes
Browse all Enterobacter asburiae genomes (822)BioProject
PRJNA1114653Enterobacter cloacae complex Genome sequencing
Pathogen Detection Resource
Annotation details
RefSeq | GenBank | |
---|---|---|
Provider | NCBI RefSeq | NCBI |
Name | GCF_040015315.1-RS_2024_06_03 | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) |
Date | Jun 3, 2024 | May 28, 2024 |
Genes | 4,403 | 4,403 |
Protein-coding | 4,255 | 4,258 |
Software version | 6.7 | 6.7 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
CheckM analysis (v1.2.2)
Completeness: 99.5% (83rd Percentile)
Contamination: 0.03%
Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Enterobacter CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).
Taxonomy check
- Taxonomy check status
- OK
- Best match status
- species_match
- Submitted organism name
- Enterobacter asburiae
- Submitted species name
- Enterobacter asburiae
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | GCA_001521715.1 | GCA_001521715.1 |
Organism name | Enterobacter asburiae | Enterobacter asburiae |
Type category | type | type |
ANI | 96.9% | 96.9% |
Assembly coverage | 87.65% | 87.65% |
Type assembly coverage | 83.21% | 83.21% |
Chromosomes
Note: This scaffold-level genome assembly includes 27 scaffolds and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_040015315.1 | GCF_040015315.1 | ASM4001531v1 | Scaffold | Jun 2, 2024 |