Genome assembly ASM4001531v1

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NCBI RefSeq assembly
GCF_040015315.1
Submitted GenBank assembly
GCA_040015315.1
Taxon
Enterobacter asburiae
Strain
4151
WGS project
JBDYIQ01
Submitter
Yongchuan Hospital of Chongqing Medical University
Date
Jun 2, 2024

Assembly statistics

RefSeqGenBank
Genome size4.6 Mb4.6 Mb
Total ungapped length4.6 Mb4.6 Mb
Number of chromosomes1010
Number of scaffolds2727
Scaffold N502.6 Mb2.6 Mb
Scaffold L5011
Number of contigs2727
Contig N502.6 Mb2.6 Mb
Contig L5011
GC percent5656
Genome coverage265.6x265.6x
Assembly levelScaffoldScaffold
View sequencesview RefSeq sequences

Sample details

BioSample ID
SAMN41503379
Description
4151
Submitter
Yongchuan Hospital of Chongqing Medical University
Strain
4151
Collected by
Pediatric Department
Collection date
Nov 28, 2022
Geographic location
China:Chongqing
Host
Homo sapiens
Host disease
not collected
Isolation source
sputum
Latitude and longitude
29.44 N 106.89 E
Host sex
male
Sample name
Enterobacter cloacae complex sp. strain 4151
SRA
SRS21412115
Models
Pathogen.cl
Package
Pathogen.cl.1.0
Submission date
2024-05-23T03:54:08.070
Publication date
2024-05-23T00:00:00.000
Last updated
2024-05-28T14:56:40.925

Assembly methods

Sequencing technology
Illumina NovaSeq
Comment
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Assembly method
SPAdes v. v3.15.5

Additional genomes

Browse all Enterobacter asburiae genomes (822)

BioProject

PRJNA1114653

Enterobacter cloacae complex Genome sequencing

Pathogen Detection Resource

Annotation details

RefSeqGenBank
ProviderNCBI RefSeqNCBI
NameGCF_040015315.1-RS_2024_06_03NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
DateJun 3, 2024May 28, 2024
Genes4,4034,403
Protein-coding4,2554,258
Software version6.76.7

About PGAP

The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.

Continue reading

Quality analysis

CheckM analysis (v1.2.2)

Completeness: 99.5% (83rd Percentile)

Contamination: 0.03%

Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Enterobacter CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).

Taxonomy check

Taxonomy check status
OK
Best match status
species_match
Submitted organism name
Enterobacter asburiae
Submitted species name
Enterobacter asburiae

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assemblyGCA_001521715.1GCA_001521715.1
Organism nameEnterobacter asburiaeEnterobacter asburiae
Type categorytypetype
ANI96.9%96.9%
Assembly coverage87.65%87.65%
Type assembly coverage83.21%83.21%

Chromosomes

Note: This scaffold-level genome assembly includes 27 scaffolds and no assembled chromosomes.

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_040015315.1GCF_040015315.1ASM4001531v1ScaffoldJun 2, 2024