Genome assembly ASM2847928v1
- NCBI RefSeq assembly
- GCF_028479285.1
- Submitted GenBank assembly
- GCA_028479285.1
- Taxon
- Providencia sp. PROV220
- Strain
- PROV220
- WGS project
- JAMPNI01
- Submitter
- Beijing Institute of Microbiology and Epidemiology
- Date
- Feb 6, 2023
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 4.8 Mb | 4.8 Mb |
Total ungapped length | 4.8 Mb | 4.8 Mb |
Number of contigs | 82 | 82 |
Contig N50 | 114 kb | 114 kb |
Contig L50 | 13 | 13 |
GC percent | 40.5 | 40.5 |
Genome coverage | 100.0x | 100.0x |
Assembly level | Contig | Contig |
View sequences | view RefSeq sequences |
Sample details
- BioSample ID
- SAMN28698577
- Description
- Microbe sample from Providencia sp. PROV220
- Submitter
- Beijing Institute of Microbiology and Epidemiology
- Isolation source
- hospital
- Collection date
- 2014
- Geographic location
- China
- Sample type
- Clinical or host-associated pathogen
- Latitude and longitude
- 39.90 N 116.212 E
- Strain
- PROV220
- Sample name
- PROV220
- SRA
- SRS18859884
- Models
- Microbe, viral or environmental
- Package
- Microbe.1.0
- Submission date
- 2022-05-27T11:02:08.200
- Publication date
- 2022-12-31T00:55:41.653
- Last updated
- 2023-09-12T01:48:17.433
Assembly methods
- Sequencing technology
- Illumina HiSeq
- Assembly method
- SOAPdenovo v. 1
Additional genomes
Browse all Providencia sp. PROV220 genomes (1)BioProject
PRJNA828374Projected collected in China from 2010 to 2018
Annotation details
RefSeq | |
---|---|
Provider | NCBI RefSeq |
Name | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) |
Date | Mar 9, 2024 |
Genes | 4,546 |
Protein-coding | 4,430 |
Software version | 6.6 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
CheckM analysis (v1.2.2)
Completeness: 98.18% (100th Percentile)
Contamination: 4.61%
Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Providencia CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).
Taxonomy check
- Taxonomy check status
- OK
- Best match status
- genus_match
- Submitted organism name
- Providencia sp. PROV220
- Submitted species name
- Providencia sp. PROV220
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | n/a | GCA_029624095.1 |
Organism name | n/a | Providencia huashanensis |
Type category | n/a | suspected_type |
ANI | n/a | 99.4% |
Assembly coverage | n/a | 86.33% |
Type assembly coverage | n/a | 86.9% |
Chromosomes
Note: This contig-level genome assembly includes 82 contigs and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_028479285.1 | GCF_028479285.1 | ASM2847928v1 | Contig | Feb 6, 2023 |