Genome assembly ASM2847928v1

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NCBI RefSeq assembly
GCF_028479285.1
Submitted GenBank assembly
GCA_028479285.1
Taxon
Providencia sp. PROV220
Strain
PROV220
WGS project
JAMPNI01
Submitter
Beijing Institute of Microbiology and Epidemiology
Date
Feb 6, 2023

Assembly statistics

RefSeqGenBank
Genome size4.8 Mb4.8 Mb
Total ungapped length4.8 Mb4.8 Mb
Number of contigs8282
Contig N50114 kb114 kb
Contig L501313
GC percent40.540.5
Genome coverage100.0x100.0x
Assembly levelContigContig
View sequencesview RefSeq sequences

Sample details

BioSample ID
SAMN28698577
Description
Microbe sample from Providencia sp. PROV220
Submitter
Beijing Institute of Microbiology and Epidemiology
Isolation source
hospital
Collection date
2014
Geographic location
China
Sample type
Clinical or host-associated pathogen
Latitude and longitude
39.90 N 116.212 E
Strain
PROV220
Sample name
PROV220
SRA
SRS18859884
Models
Microbe, viral or environmental
Package
Microbe.1.0
Submission date
2022-05-27T11:02:08.200
Publication date
2022-12-31T00:55:41.653
Last updated
2023-09-12T01:48:17.433

Assembly methods

Sequencing technology
Illumina HiSeq
Assembly method
SOAPdenovo v. 1

Additional genomes

Browse all Providencia sp. PROV220 genomes (1)

BioProject

PRJNA828374

Projected collected in China from 2010 to 2018

Annotation details

RefSeq
ProviderNCBI RefSeq
NameNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
DateMar 9, 2024
Genes4,546
Protein-coding4,430
Software version6.6

About PGAP

The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.

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Quality analysis

CheckM analysis (v1.2.2)

Completeness: 98.18% (100th Percentile)

Contamination: 4.61%

Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Providencia CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).

Taxonomy check

Taxonomy check status
OK
Best match status
genus_match
Submitted organism name
Providencia sp. PROV220
Submitted species name
Providencia sp. PROV220

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assembly

n/a

GCA_029624095.1
Organism name

n/a

Providencia huashanensis
Type category

n/a

suspected_type
ANI

n/a

99.4%
Assembly coverage

n/a

86.33%
Type assembly coverage

n/a

86.9%

Chromosomes

Note: This contig-level genome assembly includes 82 contigs and no assembled chromosomes.

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_028479285.1GCF_028479285.1ASM2847928v1ContigFeb 6, 2023