Genome assembly ASM2254057v1
- NCBI RefSeq assembly
- GCF_022540575.1
- Submitted GenBank assembly
- GCA_022540575.1
- Taxon
- Serratia marcescens
- Strain
- AGK0637
- WGS project
- JAKVVF01
- Submitter
- University Medical Center Hamburg Eppendorf
- Date
- Mar 10, 2022
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 5.9 Mb | 5.9 Mb |
Total ungapped length | 5.9 Mb | 5.9 Mb |
Number of scaffolds | 330 | 330 |
Scaffold N50 | 54.3 kb | 54.3 kb |
Scaffold L50 | 34 | 34 |
Number of contigs | 332 | 332 |
Contig N50 | 54.3 kb | 54.3 kb |
Contig L50 | 34 | 34 |
GC percent | 58 | 58 |
Genome coverage | 56.0x | 56.0x |
Assembly level | Scaffold | Scaffold |
View sequences | view RefSeq sequences |
Sample details
- BioSample ID
- SAMN21467603
- Description
- MIGS Cultured Bacterial/Archaeal sample from Serratia marcescens
- Comment
- Keywords: GSC:MIxS;MIGS:6.0
- Submitter
- University Medical Center Hamburg Eppendorf
- Strain
- AGK0637
- Collection date
- 2019-11
- Sample name
- AGK0637
- Models
- MIGS.ba, MIGS/MIMS/MIMARKS.wastewater
- Package
- MIGS.ba.wastewater.6.0
- Submission date
- 2021-09-17T07:08:11.947
- Publication date
- 2021-12-31T00:51:00.770
- Last updated
- 2021-12-31T00:51:00.770
Assembly methods
- Sequencing technology
- Illumina NextSeq
- Assembly method
- Velvet v. 1.1.04
Additional genomes
Browse all Serratia marcescens genomes (3100)BioProject
PRJNA764050E. coli and KESC group 3GCRE/CRE from hospital wastewater Genome sequencing and assembly
Pathogen Detection Resource
Annotation details
RefSeq | |
---|---|
Provider | NCBI RefSeq |
Name | GCF_022540575.1-RS_2024_04_17 |
Date | Apr 17, 2024 |
Genes | 5,932 |
Protein-coding | 5,665 |
Software version | 6.7 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
CheckM analysis (v1.2.2)
Completeness: 95.76% (35th Percentile)
Contamination: 6.73%
Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Serratia marcescens CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).
Taxonomy check
- Taxonomy check status
- OK
- Best match status
- species_match
- Submitted organism name
- Serratia marcescens
- Submitted species name
- Serratia marcescens
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | GCA_000735445.1 | GCA_000735445.1 |
Organism name | Serratia marcescens subsp. marcescens ATCC 13880 | Serratia marcescens |
Type category | type | type |
ANI | 95.26% | 95.26% |
Assembly coverage | 73.13% | 73.13% |
Type assembly coverage | 85.33% | 85.33% |
Chromosomes
Note: This scaffold-level genome assembly includes 330 scaffolds and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_022540575.1 | GCF_022540575.1 | ASM2254057v1 | Scaffold | Mar 10, 2022 |