Genome assembly ASM2254057v1

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NCBI RefSeq assembly
GCF_022540575.1
Submitted GenBank assembly
GCA_022540575.1
Taxon
Serratia marcescens
Strain
AGK0637
WGS project
JAKVVF01
Submitter
University Medical Center Hamburg Eppendorf
Date
Mar 10, 2022

Assembly statistics

RefSeqGenBank
Genome size5.9 Mb5.9 Mb
Total ungapped length5.9 Mb5.9 Mb
Number of scaffolds330330
Scaffold N5054.3 kb54.3 kb
Scaffold L503434
Number of contigs332332
Contig N5054.3 kb54.3 kb
Contig L503434
GC percent5858
Genome coverage56.0x56.0x
Assembly levelScaffoldScaffold
View sequencesview RefSeq sequences

Sample details

BioSample ID
SAMN21467603
Description
MIGS Cultured Bacterial/Archaeal sample from Serratia marcescens
Comment
Keywords: GSC:MIxS;MIGS:6.0
Submitter
University Medical Center Hamburg Eppendorf
Strain
AGK0637
Collection date
2019-11
Sample name
AGK0637
Models
MIGS.ba, MIGS/MIMS/MIMARKS.wastewater
Package
MIGS.ba.wastewater.6.0
Submission date
2021-09-17T07:08:11.947
Publication date
2021-12-31T00:51:00.770
Last updated
2021-12-31T00:51:00.770

Assembly methods

Sequencing technology
Illumina NextSeq
Assembly method
Velvet v. 1.1.04

Additional genomes

Browse all Serratia marcescens genomes (3100)

BioProject

PRJNA764050

E. coli and KESC group 3GCRE/CRE from hospital wastewater Genome sequencing and assembly

Pathogen Detection Resource

Annotation details

RefSeq
ProviderNCBI RefSeq
NameGCF_022540575.1-RS_2024_04_17
DateApr 17, 2024
Genes5,932
Protein-coding5,665
Software version6.7

About PGAP

The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.

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Quality analysis

CheckM analysis (v1.2.2)

Completeness: 95.76% (35th Percentile)

Contamination: 6.73%

Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Serratia marcescens CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).

Taxonomy check

Taxonomy check status
OK
Best match status
species_match
Submitted organism name
Serratia marcescens
Submitted species name
Serratia marcescens

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assemblyGCA_000735445.1GCA_000735445.1
Organism nameSerratia marcescens subsp. marcescens ATCC 13880Serratia marcescens
Type categorytypetype
ANI95.26%95.26%
Assembly coverage73.13%73.13%
Type assembly coverage85.33%85.33%

Chromosomes

Note: This scaffold-level genome assembly includes 330 scaffolds and no assembled chromosomes.

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_022540575.1GCF_022540575.1ASM2254057v1ScaffoldMar 10, 2022