Genome assembly ASM836457v2
- NCBI RefSeq assembly
- GCF_008364575.2
- Submitted GenBank assembly
- GCA_008364575.2
- Taxon
- Enterobacter asburiae
- Strain
- E2
- Submitter
- Microbiology and Biotechnology, Max Rubner-Institut
- Date
- Jun 6, 2024
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 4.6 Mb | 4.6 Mb |
Total ungapped length | 4.6 Mb | 4.6 Mb |
Number of chromosomes | 1 | 1 |
Number of scaffolds | 1 | 1 |
Scaffold N50 | 4.6 Mb | 4.6 Mb |
Scaffold L50 | 1 | 1 |
Number of contigs | 1 | 1 |
Contig N50 | 4.6 Mb | 4.6 Mb |
Contig L50 | 1 | 1 |
GC percent | 56 | 56 |
Genome coverage | 290.6x | 290.6x |
Assembly level | Complete Genome | Complete Genome |
View sequences | view RefSeq sequences | view GenBank sequences |
Sample details
- BioSample ID
- SAMN12560199
- Description
- Microbe sample from Enterobacter asburiae
- Submitter
- Max Rubner-Institut
- Strain
- E2
- Isolation source
- Beansprouts
- Collection date
- May 2, 2015
- Geographic location
- Germany
- Sample type
- Single cell
- Sample name
- Enterobacter_E2
- Models
- Microbe, viral or environmental
- Package
- Microbe.1.0
- Submission date
- 2019-08-12T08:27:08.100
- Publication date
- 2019-08-12T00:00:00.000
- Last updated
- 2019-08-15T13:42:22.599
Assembly methods
- Sequencing technology
- Oxford Nanopore MiniION
- Assembly method
- Unicycler v. v.04.9b
Additional genomes
Browse all Enterobacter asburiae genomes (816)BioProject
PRJNA559804Characterization of antibiotic resistant enterobacteria from fresh produce in Germany
Pathogen Detection Resource
Annotation details
RefSeq | GenBank | |
---|---|---|
Provider | NCBI RefSeq | NCBI |
Name | GCF_008364575.2-RS_2024_06_05 | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) |
Date | Jun 5, 2024 | May 31, 2023 |
Genes | 4,350 | 4,350 |
Protein-coding | 4,181 | 4,183 |
Software version | 6.7 | 6.5 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
CheckM analysis (v1.2.2)
Completeness: 99.47% (59th Percentile)
Contamination: 0.21%
Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Enterobacter CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).
Taxonomy check
- Taxonomy check status
- OK
- Best match status
- species_match
- Submitted organism name
- Enterobacter asburiae
- Submitted species name
- Enterobacter asburiae
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | GCA_016027695.1 | GCA_016027695.1 |
Organism name | Enterobacter asburiae | Enterobacter asburiae |
Type category | type | type |
ANI | 96.4% | 96.4% |
Assembly coverage | 86.77% | 86.77% |
Type assembly coverage | 82.91% | 82.91% |
Chromosomes
Chromosome | GenBank | RefSeq | Size (bp) | GC content (%) | Unlocalized count | Action |
---|---|---|---|---|---|---|
chromosome | CP126610.1 | NZ_CP126610.1 | 4,554,873 | 56 | 0 |
Revision history
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_008364575.2 | GCF_008364575.2 | ASM836457v2 | Complete Genome | Jun 6, 2024 | |
GCA_008364575.1 | GCF_008364575.1 | ASM836457v1 | Contig | Sep 9, 2019 |