Genome assembly ASM836457v2

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NCBI RefSeq assembly
GCF_008364575.2
Submitted GenBank assembly
GCA_008364575.2
Taxon
Enterobacter asburiae
Strain
E2
Submitter
Microbiology and Biotechnology, Max Rubner-Institut
Date
Jun 6, 2024

Assembly statistics

RefSeqGenBank
Genome size4.6 Mb4.6 Mb
Total ungapped length4.6 Mb4.6 Mb
Number of chromosomes11
Number of scaffolds11
Scaffold N504.6 Mb4.6 Mb
Scaffold L5011
Number of contigs11
Contig N504.6 Mb4.6 Mb
Contig L5011
GC percent5656
Genome coverage290.6x290.6x
Assembly levelComplete GenomeComplete Genome
View sequencesview RefSeq sequencesview GenBank sequences

Sample details

BioSample ID
SAMN12560199
Description
Microbe sample from Enterobacter asburiae
Submitter
Max Rubner-Institut
Strain
E2
Isolation source
Beansprouts
Collection date
May 2, 2015
Geographic location
Germany
Sample type
Single cell
Sample name
Enterobacter_E2
Models
Microbe, viral or environmental
Package
Microbe.1.0
Submission date
2019-08-12T08:27:08.100
Publication date
2019-08-12T00:00:00.000
Last updated
2019-08-15T13:42:22.599

Assembly methods

Sequencing technology
Oxford Nanopore MiniION
Assembly method
Unicycler v. v.04.9b

Additional genomes

Browse all Enterobacter asburiae genomes (816)

BioProject

PRJNA559804

Characterization of antibiotic resistant enterobacteria from fresh produce in Germany

Pathogen Detection Resource

Annotation details

RefSeqGenBank
ProviderNCBI RefSeqNCBI
NameGCF_008364575.2-RS_2024_06_05NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
DateJun 5, 2024May 31, 2023
Genes4,3504,350
Protein-coding4,1814,183
Software version6.76.5

About PGAP

The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.

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Quality analysis

CheckM analysis (v1.2.2)

Completeness: 99.47% (59th Percentile)

Contamination: 0.21%

Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Enterobacter CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).

Taxonomy check

Taxonomy check status
OK
Best match status
species_match
Submitted organism name
Enterobacter asburiae
Submitted species name
Enterobacter asburiae

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assemblyGCA_016027695.1GCA_016027695.1
Organism nameEnterobacter asburiaeEnterobacter asburiae
Type categorytypetype
ANI96.4%96.4%
Assembly coverage86.77%86.77%
Type assembly coverage82.91%82.91%

Chromosomes

Chromosome
GenBank
RefSeq
Size (bp)
GC content (%)
Unlocalized count
Action
chromosomeCP126610.1NZ_CP126610.14,554,873560

Revision history

GenBank
RefSeq
Name
Level
Date
Action
GCA_008364575.2GCF_008364575.2ASM836457v2Complete GenomeJun 6, 2024
GCA_008364575.1GCF_008364575.1ASM836457v1ContigSep 9, 2019