Genome assembly 7738_3#94

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NCBI RefSeq assembly
GCF_001210885.1
Submitted GenBank assembly
GCA_001210885.1
Taxon
Staphylococcus aureus
Strain
USFL280
WGS project
CSEN01
Submitter
SC
Date
Jul 20, 2015

Assembly statistics

RefSeqGenBank
Genome size2.9 Mb2.9 Mb
Total ungapped length2.9 Mb2.9 Mb
Number of contigs3636
Contig N50346.5 kb346.5 kb
Contig L5033
GC percent32.532.5
Genome coverage100.0x100.0x
Assembly levelContigContig
View sequencesview RefSeq sequencesview GenBank sequences

Sample details

BioSample ID
SAMEA1324687
Description
Staphylococcus aureus; Staphylococcus aureus
Submitter
EBI
ArrayExpress-Species
Staphylococcus aureus
ENA-CHECKLIST
ERC000011
ENA-FIRST-PUBLIC
2012-06-06T17:01:37Z
ENA-LAST-UPDATE
2018-03-09T09:56:00Z
External Id
SAMEA1324687
INSDC center name
SC
INSDC first public
2012-06-06T17:01:37Z
INSDC last update
2018-03-09T09:56:00Z
INSDC status
public
Submitter Id
USFL280-sc-2012-11-08T15:45:53Z-1351072
Collection date
Nov 1, 2010
Geographic location
USA: New York, Inwood
Host health state
disease
Isolation source
soft tissue
Sample name
USFL280-sc-2012-11-08T15:45:53Z-1351072
Scientific name
Staphylococcus aureus
Serovar
ST8
Host
Homo sapiens
Strain
USFL280
SRA
ERS093043
Models
Generic
Package
Generic.1.0
Submission date
2012-07-14T12:22:26.330
Publication date
2012-06-06T00:00:00.000
Last updated
2024-02-05T19:21:45.000

Additional genomes

Browse all Staphylococcus aureus genomes (102273)

BioProject

PRJEB2870

Staphylococcus aureus (USFL) study

Annotation details

RefSeqGenBank
ProviderNCBI RefSeqSC
NameNCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation submitted by SC
DateNov 10, 2023Jul 20, 2015
Genes2,9922,803
Protein-coding2,8282,734
Software version6.6

About PGAP

The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.

Continue reading

Quality analysis

CheckM analysis (v1.2.2)

Completeness: 97.99% (34th Percentile)

Contamination: 0.39%

Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Staphylococcus aureus CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).

Taxonomy check

Taxonomy check status
OK
Best match status
species_match
Submitted organism name
Staphylococcus aureus
Submitted species name
Staphylococcus aureus

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assemblyGCA_001027105.1GCA_001027105.1
Organism nameStaphylococcus aureusStaphylococcus aureus
Type categorytypetype
ANI99.87%99.87%
Assembly coverage92.86%92.86%
Type assembly coverage97.55%97.55%

Chromosomes

Note: This contig-level genome assembly includes 36 contigs and no assembled chromosomes.

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_001210885.1GCF_001210885.17738_3#94ContigJul 20, 2015