Genome assembly ASM2250860v1
- Submitted GenBank assembly
- GCA_022508605.1
- Taxon
- Bacteroidales bacterium
- Isolate
- HAN090
- WGS project
- JAFLUX01
- Submitter
- ChinaCDC
- Date
- Mar 7, 2022
Genome notes
NCBI has noted the following for this genome assembly. View definitions
- derived from metagenome
- genus undefined
Assembly statistics
GenBank | |
---|---|
Genome size | 1.9 Mb |
Total ungapped length | 1.9 Mb |
Number of scaffolds | 99 |
Scaffold N50 | 40.6 kb |
Scaffold L50 | 18 |
Number of contigs | 102 |
Contig N50 | 38.5 kb |
Contig L50 | 19 |
GC percent | 56 |
Genome coverage | 96.8x |
Assembly level | Scaffold |
Sample details
- BioSample ID
- SAMN17599678
- Description
- MIMAG Metagenome-assembled Genome sample from Bacteroidales bacterium
- Comment
- Keywords: GSC:MIxS;MIMAG:6.0
- Submitter
- China CDC
- Collection date
- 2015-07
- Broad-scale environmental context
- not collected
- Local-scale environmental context
- not collected
- Environmental medium
- not collected
- Geographic location
- China:Yushu
- Host
- Plateau pika
- Latitude and longitude
- 33.55 N 97.6 E
- Altitude
- 3942 m
- Source material identifiers
- 90
- Isolate
- HAN090
- Metagenomic
- 1
- Environmental-sample
- 1
- Sample type
- metagenomic assembly
- Metagenome source
- gut metagenome
- Isolation source
- intestinal content
- Derived from
- This BioSample is a metagenomic assembly obtained from the gut metagenome BioSample: SAMN17734903
- Sample name
- p17_bin_1
- Models
- MIMAG.host-associated
- Package
- MIMAG.host-associated.6.0
- Submission date
- 2021-01-26T22:15:14.483
- Publication date
- 2022-02-01T00:52:54.790
- Last updated
- 2022-02-01T00:52:54.790
Assembly methods
- Sequencing technology
- Illumina
- Comment
- The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
- Assembly method
- SPAdes v. 3.13.0
Additional genomes
Browse all Bacteroidales bacterium genomes (5509)BioProject
PRJNA692773Multi-omics studies of uncultured microbiota of Plateau pika
Annotation details
GenBank | |
---|---|
Provider | NCBI |
Name | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) |
Date | Mar 5, 2021 |
Genes | 1,723 |
Protein-coding | 1,679 |
Software version | 5.1 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
Taxonomy check
- Taxonomy check status
- Inconclusive
- Best match status
- low_coverage
- Submitted organism name
- Bacteroidales bacterium
- Submitted species name
- Bacteroidales bacterium
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | n/a | GCA_018065985.1 |
Organism name | n/a | Candidatus Cryptobacteroides choladohippi |
Type category | n/a | suspected_type |
ANI | n/a | 80.93% |
Assembly coverage | n/a | 1.66% |
Type assembly coverage | n/a | 1.44% |
Chromosomes
Note: This scaffold-level genome assembly includes 99 scaffolds and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_022508605.1 | n/a | ASM2250860v1 | Scaffold | Mar 7, 2022 |