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Genome assembly ASM2250860v1

FTP
Actions
Submitted GenBank assembly
GCA_022508605.1
Taxon
Bacteroidales bacterium
Isolate
HAN090
WGS project
JAFLUX01
Submitter
ChinaCDC
Date
Mar 7, 2022

Genome notes

NCBI has noted the following for this genome assembly. View definitions

  • derived from metagenome
  • genus undefined

Assembly statistics

GenBank
Genome size1.9 Mb
Total ungapped length1.9 Mb
Number of scaffolds99
Scaffold N5040.6 kb
Scaffold L5018
Number of contigs102
Contig N5038.5 kb
Contig L5019
GC percent56
Genome coverage96.8x
Assembly levelScaffold

Sample details

BioSample ID
SAMN17599678
Description
MIMAG Metagenome-assembled Genome sample from Bacteroidales bacterium
Comment
Keywords: GSC:MIxS;MIMAG:6.0
Submitter
China CDC
Collection date
2015-07
Broad-scale environmental context
not collected
Local-scale environmental context
not collected
Environmental medium
not collected
Geographic location
China:Yushu
Host
Plateau pika
Latitude and longitude
33.55 N 97.6 E
Altitude
3942 m
Source material identifiers
90
Isolate
HAN090
Metagenomic
1
Environmental-sample
1
Sample type
metagenomic assembly
Metagenome source
gut metagenome
Isolation source
intestinal content
Derived from
This BioSample is a metagenomic assembly obtained from the gut metagenome BioSample: SAMN17734903
Sample name
p17_bin_1
Models
MIMAG.host-associated
Package
MIMAG.host-associated.6.0
Submission date
2021-01-26T22:15:14.483
Publication date
2022-02-01T00:52:54.790
Last updated
2022-02-01T00:52:54.790

Assembly methods

Sequencing technology
Illumina
Comment
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Assembly method
SPAdes v. 3.13.0

Additional genomes

Browse all Bacteroidales bacterium genomes (5509)

BioProject

PRJNA692773

Multi-omics studies of uncultured microbiota of Plateau pika

Annotation details

GenBank
ProviderNCBI
NameNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
DateMar 5, 2021
Genes1,723
Protein-coding1,679
Software version5.1

About PGAP

The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.

Continue reading

Quality analysis

Taxonomy check

Taxonomy check status
Inconclusive
Best match status
low_coverage
Submitted organism name
Bacteroidales bacterium
Submitted species name
Bacteroidales bacterium

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assembly

n/a

GCA_018065985.1
Organism name

n/a

Candidatus Cryptobacteroides choladohippi
Type category

n/a

suspected_type
ANI

n/a

80.93%
Assembly coverage

n/a

1.66%
Type assembly coverage

n/a

1.44%

Chromosomes

Note: This scaffold-level genome assembly includes 99 scaffolds and no assembled chromosomes.

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_022508605.1

n/a

ASM2250860v1ScaffoldMar 7, 2022