Genome assembly ASM1714240v1
- NCBI RefSeq assembly
- GCF_017142405.1 (suppressed)
- Submitted GenBank assembly
- GCA_017142405.1
- Taxon
- Serratia marcescens
- Strain
- MRSN696556
- Submitter
- Walter Reed Army Institute of Research
- Date
- Feb 25, 2021
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 5.8 Mb | 5.8 Mb |
Total ungapped length | 5.8 Mb | 5.8 Mb |
Number of chromosomes | 9 | 9 |
Number of scaffolds | 13 | 13 |
Scaffold N50 | 5.2 Mb | 5.2 Mb |
Scaffold L50 | 1 | 1 |
Number of contigs | 13 | 13 |
Contig N50 | 5.2 Mb | 5.2 Mb |
Contig L50 | 1 | 1 |
GC percent | 58 | 58 |
Genome coverage | 100.0x | 100.0x |
Assembly level | Chromosome | Chromosome |
Sample details
- BioSample ID
- SAMN17317342
- Description
- Pathogen: clinical or host-associated sample from Serratia marcescens
- Submitter
- Walter Reed Army Institute of Research
- Strain
- MRSN696556
- Collected by
- Brooke Army Medical Center
- Collection date
- Oct 17, 2019
- Geographic location
- USA: Texas
- Host
- Homo sapiens
- Host disease
- bacteremia
- Isolation source
- blood
- Latitude and longitude
- 29.46 N 98.41 W
- Sample name
- MRSN696556
- Models
- Pathogen.cl
- Package
- Pathogen.cl.1.0
- Submission date
- 2021-01-14T16:39:06.346
- Publication date
- 2021-01-25T00:00:00.000
- Last updated
- 2021-02-24T11:50:13.628
Assembly methods
- Sequencing technology
- Oxford Nanopore Minion/Illumina Miseq
- Comment
- The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
- Assembly method
- Unicycler v. V0.4.8
Additional genomes
Browse all Serratia marcescens genomes (3125)BioProject
PRJNA692233Identification of a novel blaKPC variant in C.koseri
Annotation details
RefSeq | GenBank | |
---|---|---|
Provider | NCBI RefSeq | NCBI |
Name | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) |
Date | Mar 30, 2023 | Jan 21, 2021 |
Genes | 5,646 | 5,633 |
Protein-coding | 5,410 | 5,342 |
Software version | 6.4 | 5.0 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
CheckM analysis (v1.2.2)
Completeness: 94.83% (9th Percentile)
Contamination: 8.07%
Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Serratia marcescens CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).
Taxonomy check
- Taxonomy check status
- OK
- Best match status
- species_match
- Submitted organism name
- Serratia marcescens
- Submitted species name
- Serratia marcescens
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | GCA_017654245.1 | GCA_017654245.1 |
Organism name | Serratia marcescens subsp. marcescens ATCC 13880 | Serratia marcescens |
Type category | type | type |
ANI | 95.32% | 95.32% |
Assembly coverage | 73.91% | 73.91% |
Type assembly coverage | 83.97% | 83.97% |
Chromosomes
Chromosome | GenBank | RefSeq | Size (bp) | GC content (%) | Unlocalized count | Action |
---|---|---|---|---|---|---|
chromosome | CP068395.1 | NZ_CP068395.1 | 5,235,632 | 59.5 | 0 | |
unnamed1 | CP068396.1 | NZ_CP068396.1 | 369,008 | 48 | 0 | |
unnamed2 | CP068397.1 | NZ_CP068397.1 | 76,335 | 54 | 0 | |
unnamed3 | CP068398.1 | NZ_CP068398.1 | 62,414 | 47.5 | 0 | |
unnamed4 | CP068399.1 | NZ_CP068399.1 | 59,223 | 50.5 | 0 | |
unnamed5 | CP068400.1 | NZ_CP068400.1 | 19,650 | 54.5 | 0 | |
unnamed7 | CP068406.1 | NZ_CP068406.1 | 3,223 | 56.5 | 0 | |
unnamed8 | CP068407.1 | NZ_CP068407.1 | 1,240 | 46 | 0 |
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_017142405.1 | GCF_017142405.1 | ASM1714240v1 | Chromosome | Feb 25, 2021 |