Genome assembly ASM1671142v1

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Submitted GenBank assembly
GCA_016711425.1
Taxon
Elusimicrobiota bacterium
Isolate
Hade_18-Q3-R52-61_MAXAC.319
WGS project
JADJTB01
Submitter
Aalborg University
Date
Jan 19, 2021

Genome notes

NCBI has noted the following for this genome assembly. View definitions

  • derived from metagenome
  • genus undefined

Assembly statistics

GenBank
Genome size2.6 Mb
Total ungapped length2.6 Mb
Number of contigs6
Contig N50773.5 kb
Contig L502
GC percent63.5
Genome coverage22.9x
Assembly levelContig

Sample details

BioSample ID
SAMN16426072
Description
MIMAG Metagenome-assembled Genome sample from Elusimicrobiota bacterium
Comment
Keywords: GSC:MIxS;MIMAG:6.0
Submitter
Aalborg University
Collection date
Aug 29, 2018
Broad-scale environmental context
aquatic biome [ENVO:00002030]
Local-scale environmental context
Waste Water [ENVO:00002001]
Environmental medium
Activated Sludge [ENVO:00002046]
Geographic location
Denmark: Haderslev
Latitude and longitude
55.249786 N 9.508609 E
Isolate
Hade_18-Q3-R52-61_MAXAC.319
Isolation source
activated sludge from Hade_18-Q3-R52-61
Derived from
This BioSample is a metagenomic assembly obtained from the Hade_18-Q3-R52-61 activated sludge metagenome BioSample: SAMN14825696.
Metagenomic
1
Environmental-sample
1
Sample type
metagenomic assembly
Metagenome source
activated sludge metagenome
Sample name
Hade_18-Q3-R52-61_MAXAC.319
Models
MIMAG.wastewater
Package
MIMAG.wastewater.6.0
Submission date
2020-10-13T04:06:26.160
Publication date
2021-01-20T00:00:00.000
Last updated
2023-03-01T21:06:33.946

Assembly methods

Sequencing technology
Oxford Nanopore PromethION
Comment
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Assembly method
CANU v. 1.8

Additional genomes

Browse all Elusimicrobiota bacterium genomes (391)

BioProject

PRJNA629478

Activated sludge metagenome Genome sequencing and assembly

Annotation details

GenBank
ProviderNCBI
NameNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
DateNov 6, 2020
Genes2,229
Protein-coding2,146
Software version4.13

About PGAP

The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.

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Quality analysis

Taxonomy check

Taxonomy check status
Inconclusive
Best match status
low_coverage
Submitted organism name
Elusimicrobiota bacterium
Submitted species name
Elusimicrobiota bacterium

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assembly

n/a

GCA_900091535.1
Organism name

n/a

Micromonospora carbonacea
Type category

n/a

type
ANI

n/a

76.57%
Assembly coverage

n/a

0.06%
Type assembly coverage

n/a

0.02%

Chromosomes

Note: This contig-level genome assembly includes 6 contigs and no assembled chromosomes.

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_016711425.1

n/a

ASM1671142v1ContigJan 19, 2021