Genome assembly ASM1670277v1

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Submitted GenBank assembly
GCA_016702775.1
Taxon
Bacteroidota bacterium
Isolate
Aved_18-Q3-R54-62_MAXAC.090
WGS project
JADJDI01
Submitter
Aalborg University
Date
Jan 19, 2021

Genome notes

NCBI has noted the following for this genome assembly. View definitions

  • derived from metagenome
  • genus undefined

Assembly statistics

GenBank
Genome size4.2 Mb
Total ungapped length4.2 Mb
Number of contigs34
Contig N50253 kb
Contig L505
GC percent35.5
Genome coverage16.9x
Assembly levelContig

Sample details

BioSample ID
SAMN16425636
Description
MIMAG Metagenome-assembled Genome sample from Bacteroidota bacterium
Comment
Keywords: GSC:MIxS;MIMAG:6.0
Submitter
Aalborg University
Collection date
Aug 30, 2018
Broad-scale environmental context
aquatic biome [ENVO:00002030]
Local-scale environmental context
Waste Water [ENVO:00002001]
Environmental medium
Activated Sludge [ENVO:00002046]
Geographic location
Denmark: Avedore
Latitude and longitude
55.608613 N 12.450537 E
Isolate
Aved_18-Q3-R54-62_MAXAC.090
Isolation source
activated sludge from Aved_18-Q3-R54-62
Derived from
This BioSample is a metagenomic assembly obtained from the Aved_18-Q3-R54-62 activated sludge metagenome BioSample: SAMN14825672.
Metagenomic
1
Environmental-sample
1
Sample type
metagenomic assembly
Metagenome source
activated sludge metagenome
Sample name
Aved_18-Q3-R54-62_MAXAC.090
Models
MIMAG.wastewater
Package
MIMAG.wastewater.6.0
Submission date
2020-10-13T04:06:17.250
Publication date
2021-01-20T00:00:00.000
Last updated
2023-01-24T21:07:10.014

Assembly methods

Sequencing technology
Oxford Nanopore PromethION
Comment
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Assembly method
CANU v. 1.8

Additional genomes

Browse all Bacteroidota bacterium genomes (4889)

BioProject

PRJNA629478

Activated sludge metagenome Genome sequencing and assembly

Annotation details

GenBank
ProviderNCBI
NameNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
DateNov 5, 2020
Genes3,686
Protein-coding3,391
Software version4.13

About PGAP

The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.

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Quality analysis

Taxonomy check

Taxonomy check status
Inconclusive
Best match status
low_coverage
Submitted organism name
Bacteroidota bacterium
Submitted species name
Bacteroidota bacterium

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assembly

n/a

GCA_016714365.1
Organism name

n/a

Candidatus Vicinibacter affinis
Type category

n/a

suspected_type
ANI

n/a

92.77%
Assembly coverage

n/a

0.96%
Type assembly coverage

n/a

0.86%

Chromosomes

Note: This contig-level genome assembly includes 34 contigs and no assembled chromosomes.

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_016702775.1

n/a

ASM1670277v1ContigJan 19, 2021