Genome assembly ASM1670277v1
- Submitted GenBank assembly
- GCA_016702775.1
- Taxon
- Bacteroidota bacterium
- Isolate
- Aved_18-Q3-R54-62_MAXAC.090
- WGS project
- JADJDI01
- Submitter
- Aalborg University
- Date
- Jan 19, 2021
Genome notes
NCBI has noted the following for this genome assembly. View definitions
- derived from metagenome
- genus undefined
Assembly statistics
GenBank | |
---|---|
Genome size | 4.2 Mb |
Total ungapped length | 4.2 Mb |
Number of contigs | 34 |
Contig N50 | 253 kb |
Contig L50 | 5 |
GC percent | 35.5 |
Genome coverage | 16.9x |
Assembly level | Contig |
Sample details
- BioSample ID
- SAMN16425636
- Description
- MIMAG Metagenome-assembled Genome sample from Bacteroidota bacterium
- Comment
- Keywords: GSC:MIxS;MIMAG:6.0
- Submitter
- Aalborg University
- Collection date
- Aug 30, 2018
- Broad-scale environmental context
- aquatic biome [ENVO:00002030]
- Local-scale environmental context
- Waste Water [ENVO:00002001]
- Environmental medium
- Activated Sludge [ENVO:00002046]
- Geographic location
- Denmark: Avedore
- Latitude and longitude
- 55.608613 N 12.450537 E
- Isolate
- Aved_18-Q3-R54-62_MAXAC.090
- Isolation source
- activated sludge from Aved_18-Q3-R54-62
- Derived from
- This BioSample is a metagenomic assembly obtained from the Aved_18-Q3-R54-62 activated sludge metagenome BioSample: SAMN14825672.
- Metagenomic
- 1
- Environmental-sample
- 1
- Sample type
- metagenomic assembly
- Metagenome source
- activated sludge metagenome
- Sample name
- Aved_18-Q3-R54-62_MAXAC.090
- Models
- MIMAG.wastewater
- Package
- MIMAG.wastewater.6.0
- Submission date
- 2020-10-13T04:06:17.250
- Publication date
- 2021-01-20T00:00:00.000
- Last updated
- 2023-01-24T21:07:10.014
Assembly methods
- Sequencing technology
- Oxford Nanopore PromethION
- Comment
- The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
- Assembly method
- CANU v. 1.8
Additional genomes
Browse all Bacteroidota bacterium genomes (4889)BioProject
PRJNA629478Activated sludge metagenome Genome sequencing and assembly
Annotation details
GenBank | |
---|---|
Provider | NCBI |
Name | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) |
Date | Nov 5, 2020 |
Genes | 3,686 |
Protein-coding | 3,391 |
Software version | 4.13 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
Taxonomy check
- Taxonomy check status
- Inconclusive
- Best match status
- low_coverage
- Submitted organism name
- Bacteroidota bacterium
- Submitted species name
- Bacteroidota bacterium
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | n/a | GCA_016714365.1 |
Organism name | n/a | Candidatus Vicinibacter affinis |
Type category | n/a | suspected_type |
ANI | n/a | 92.77% |
Assembly coverage | n/a | 0.96% |
Type assembly coverage | n/a | 0.86% |
Chromosomes
Note: This contig-level genome assembly includes 34 contigs and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_016702775.1 | n/a | ASM1670277v1 | Contig | Jan 19, 2021 |