Genome assembly ASM986168v1

FTP
Actions
Submitted GenBank assembly
GCA_009861685.1
Taxon
Salmonella enterica subsp. enterica serovar Kentucky
Strain
N17-2372
WGS project
QDZX01
Submitter
CFSAN
Date
Jan 13, 2020

Genome notes

NCBI has noted the following for this genome assembly. View definitions

  • from large multi-isolate project

Assembly statistics

GenBank
Genome size4.7 Mb
Total ungapped length4.7 Mb
Number of contigs36
Contig N50332.8 kb
Contig L505
GC percent52
Genome coverage50.0x
Assembly levelContig

Sample details

BioSample ID
SAMN08936742
Description
Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar Kentucky
Submitter
FDA Center for Food Safety and Applied Nutrition
Attribute package
environmental/food/other
Isolation source
chicken
Ontological term
chicken:foodon_03411457
Interagency Food Safety Analytics Collaboration (IFSAC) category
poultry
Source type
food
Collected by
University of Zurich | Institute for Food Safety and Hygiene
Collection date
2017
Geographic location
Switzerland
Isolate name alias
CFSAN079263
Serovar
Kentucky
Sub species
enterica
Strain
N17-2372
SRA
SRS3471457
CFSAN
CFSAN079263
Models
Pathogen.env
Package
Pathogen.env.1.0
Submission date
2018-04-16T11:31:05.480
Publication date
2018-06-27T00:00:00.000
Last updated
2022-07-02T11:39:33.913

Assembly methods

Sequencing technology
Illumina MiSeq
Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Bacteria available from stephanr@fsafety.uzh.ch.

Assembly method
CLC NGS Cell v. 9

Additional genomes

Browse all Salmonella enterica genomes (581026)

BioProject

PRJNA378379

GenomeTrakr Project: DVA, OARSA

Annotation details

GenBank
ProviderNCBI
NameNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
DateApr 27, 2018
Genes4,748
Protein-coding4,501
Software version4.5

About PGAP

The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.

Continue reading

Quality analysis

Taxonomy check

Taxonomy check status
OK
Best match status
derived_species_match
Submitted organism name
Salmonella enterica subsp. enterica serovar Kentucky
Submitted species name
Salmonella enterica

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assemblyGCA_000006945.2GCA_000006945.2
Organism nameSalmonella enterica subsp. enterica serovar Typhimurium str. LT2Salmonella enterica
Type categorytypetype
ANI98.76%98.76%
Assembly coverage93.57%93.57%
Type assembly coverage88.17%88.17%

Chromosomes

Note: This contig-level genome assembly includes 36 contigs and no assembled chromosomes.

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_009861685.1

n/a

ASM986168v1ContigJan 13, 2020