Genome assembly ASM986168v1
- Submitted GenBank assembly
- GCA_009861685.1
- Taxon
- Salmonella enterica subsp. enterica serovar Kentucky
- Strain
- N17-2372
- WGS project
- QDZX01
- Submitter
- CFSAN
- Date
- Jan 13, 2020
Genome notes
NCBI has noted the following for this genome assembly. View definitions
- from large multi-isolate project
Assembly statistics
GenBank | |
---|---|
Genome size | 4.7 Mb |
Total ungapped length | 4.7 Mb |
Number of contigs | 36 |
Contig N50 | 332.8 kb |
Contig L50 | 5 |
GC percent | 52 |
Genome coverage | 50.0x |
Assembly level | Contig |
Sample details
- BioSample ID
- SAMN08936742
- Description
- Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar Kentucky
- Submitter
- FDA Center for Food Safety and Applied Nutrition
- Attribute package
- environmental/food/other
- Isolation source
- chicken
- Ontological term
- chicken:foodon_03411457
- Interagency Food Safety Analytics Collaboration (IFSAC) category
- poultry
- Source type
- food
- Collected by
- University of Zurich | Institute for Food Safety and Hygiene
- Collection date
- 2017
- Geographic location
- Switzerland
- Isolate name alias
- CFSAN079263
- Serovar
- Kentucky
- Sub species
- enterica
- Strain
- N17-2372
- SRA
- SRS3471457
- CFSAN
- CFSAN079263
- Models
- Pathogen.env
- Package
- Pathogen.env.1.0
- Submission date
- 2018-04-16T11:31:05.480
- Publication date
- 2018-06-27T00:00:00.000
- Last updated
- 2022-07-02T11:39:33.913
Assembly methods
- Sequencing technology
- Illumina MiSeq
- Comment
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria available from stephanr@fsafety.uzh.ch.
- Assembly method
- CLC NGS Cell v. 9
Additional genomes
Browse all Salmonella enterica genomes (581026)BioProject
PRJNA378379GenomeTrakr Project: DVA, OARSA
Annotation details
GenBank | |
---|---|
Provider | NCBI |
Name | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) |
Date | Apr 27, 2018 |
Genes | 4,748 |
Protein-coding | 4,501 |
Software version | 4.5 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
Taxonomy check
- Taxonomy check status
- OK
- Best match status
- derived_species_match
- Submitted organism name
- Salmonella enterica subsp. enterica serovar Kentucky
- Submitted species name
- Salmonella enterica
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | GCA_000006945.2 | GCA_000006945.2 |
Organism name | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Salmonella enterica |
Type category | type | type |
ANI | 98.76% | 98.76% |
Assembly coverage | 93.57% | 93.57% |
Type assembly coverage | 88.17% | 88.17% |
Chromosomes
Note: This contig-level genome assembly includes 36 contigs and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_009861685.1 | n/a | ASM986168v1 | Contig | Jan 13, 2020 |