taxonomy

Name

dataformat tsv taxonomy - Convert Taxonomy Report into TSV format

Synopsis

dataformat tsv taxonomy [flags]

Description

Convert Taxonomy Report into TSV format.

Refer to NCBI’s download and install documentation for information about getting started with the command-line tools.

Examples

  dataformat tsv taxonomy --inputfile taxonomy_report.jsonl

Options

      --elide-header       Do not output header
      --fields strings     Comma-separated list of fields
      --force              Force dataformat to run without type check prompt
  -h, --help               help for taxonomy
      --inputfile string   Input file (default "/dev/stdin")
      --list-templates     List all all available templates for this report type
      --package string     Data package (zip archive), inputfile parameter is relative to the root path inside the archive
      --template string    Pre-defined output format for the current report type