microbigge

Name

dataformat tsv microbigge - Convert MicroBIGG-E Data Report into TSV format

Synopsis

dataformat tsv microbigge [flags]

Description

Convert MicroBIGG-E Data Report into TSV format.

Refer to NCBI’s download and install documentation for information about getting started with the command-line tools.

Examples

  dataformat tsv microbigge --inputfile pathogen_package/ncbi_dataset/data/data_report.jsonl
  dataformat tsv microbigge --package virus-sars2-refseq.zip

Options

      --elide-header       Do not output header
      --fields strings     Comma-separated list of fields
      --force              Force dataformat to run without type check prompt
  -h, --help               help for microbigge
      --inputfile string   Input file (default "/dev/stdin")
      --package string     Data package (zip archive), inputfile parameter is relative to the root path inside the archive

Fields