Get Alphainfluenza virus genome metadata

Retrieve Alphainfluenza virus metadata by accession or taxonomic name

Get Alphainfluenza virus genome metadata

Retrieve Alphainfluenza virus metadata by accession or taxonomic name

Get virus primary metadata by taxon

Get Alphainfluenza virus genome metadata released after 05/01/2024 using the organism name or NCBI Taxonomy ID.

datasets summary virus genome taxon "alphainfluenzavirus influenzae" --released-after 05/01/2024

Get virus primary metadata by accession.

For virus genomes, use Genbank nucleotide accessions instead of genome assembly accessions (which start with GCA or GCF).

datasets summary virus genome accession PP756108.1

Create a tsv output of virus primary metadata using dataformat

datasets summary virus genome taxon 2955291 \
 --released-after 05/01/2024 \
 --as-json-lines | dataformat tsv virus-genome \
 --fields accession,geo-location,host-name,virus-name
Output (first 10 lines):

Accession   Geographic Location  Host Name       Virus Name
PP758172.1  Chile                Larus belcheri  Influenza A virus
PP758171.1  Chile                Larus belcheri  Influenza A virus
PP758170.1  Chile                Larus belcheri  Influenza A virus
PP758169.1  Chile                Larus belcheri  Influenza A virus
PP758168.1  Chile                Larus belcheri  Influenza A virus
PP758167.1  Chile                Larus belcheri  Influenza A virus
PP758166.1  Chile                Larus belcheri  Influenza A virus
PP758147.1  Chile                Larus belcheri  Influenza A virus
PP758146.1  Chile                Larus belcheri  Influenza A virus
PP758145.1  Chile                Larus belcheri  Influenza A virus
Generated November 25, 2024