In silico analysis, which includes protein predictors and evolutionary conservation, supports a deleterious effect; Has not been previously reported as pathogenic or benign in a clinical setting to our knowledge
ClinVar Genomic variation as it relates to human health
NM_001368894.2(PAX6):c.622G>A (p.Gly208Arg)
Germline
Classification
Help
The aggregate germline classification for this variant, typically for a monogenic or Mendelian disorder as in the ACMG/AMP guidelines, or for response to a drug. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the aggregate classification.
(2)
Help
Stars represent the aggregate review status, or the level of review supporting the aggregate germline classification for this VCV record. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. The number of submissions which contribute to this review status is shown in parentheses.
Conflicting classifications of pathogenicity
Uncertain significance(1); Likely benign(1)
Uncertain significance(1); Likely benign(1)
2
criteria provided, conflicting classifications
Somatic
No data submitted for somatic clinical impact
Somatic
No data submitted for oncogenicity
Variant Details
- Identifiers
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NM_001368894.2(PAX6):c.622G>A (p.Gly208Arg)
Variation ID: 833772 Accession: VCV000833772.9
- Type and length
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single nucleotide variant, 1 bp
- Location
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Cytogenetic: 11p13 11: 31794732 (GRCh38) [ NCBI UCSC ] 11: 31816280 (GRCh37) [ NCBI UCSC ]
- Timeline in ClinVar
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First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.
Last submission Help The date of the most recent submission for each type of classification for this variant.
Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline Apr 15, 2020 Feb 28, 2024 Jan 30, 2020 - HGVS
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... more HGVS ... less HGVSNucleotide Protein Molecular
consequenceNM_001368894.2:c.622G>A MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.
NP_001355823.1:p.Gly208Arg missense NM_000280.3:c.580G>A NM_000280.6:c.580G>A NP_000271.1:p.Gly194Arg missense NM_001127612.3:c.580G>A NP_001121084.1:p.Gly194Arg missense NM_001258462.3:c.622G>A NP_001245391.1:p.Gly208Arg missense NM_001258463.2:c.622G>A NP_001245392.1:p.Gly208Arg missense NM_001258464.2:c.580G>A NP_001245393.1:p.Gly194Arg missense NM_001258465.3:c.580G>A NP_001245394.1:p.Gly194Arg missense NM_001310158.2:c.622G>A NP_001297087.1:p.Gly208Arg missense NM_001310159.1:c.580G>A NP_001297088.1:p.Gly194Arg missense NM_001310160.2:c.172G>A NP_001297089.1:p.Gly58Arg missense NM_001310161.3:c.172G>A NP_001297090.1:p.Gly58Arg missense NM_001368887.2:c.580G>A NP_001355816.1:p.Gly194Arg missense NM_001368888.2:c.580G>A NP_001355817.1:p.Gly194Arg missense NM_001368889.2:c.580G>A NP_001355818.1:p.Gly194Arg missense NM_001368890.2:c.580G>A NP_001355819.1:p.Gly194Arg missense NM_001368891.2:c.580G>A NP_001355820.1:p.Gly194Arg missense NM_001368892.2:c.622G>A NP_001355821.1:p.Gly208Arg missense NM_001368893.2:c.622G>A NP_001355822.1:p.Gly208Arg missense NM_001368899.2:c.172G>A NP_001355828.1:p.Gly58Arg missense NM_001368900.2:c.172G>A NP_001355829.1:p.Gly58Arg missense NM_001368901.2:c.172G>A NP_001355830.1:p.Gly58Arg missense NM_001368902.2:c.172G>A NP_001355831.1:p.Gly58Arg missense NM_001368903.2:c.172G>A NP_001355832.1:p.Gly58Arg missense NM_001368904.2:c.172G>A NP_001355833.1:p.Gly58Arg missense NM_001368905.2:c.172G>A NP_001355834.1:p.Gly58Arg missense NM_001368906.2:c.172G>A NP_001355835.1:p.Gly58Arg missense NM_001368907.2:c.172G>A NP_001355836.1:p.Gly58Arg missense NM_001368908.2:c.172G>A NP_001355837.1:p.Gly58Arg missense NM_001368909.2:c.172G>A NP_001355838.1:p.Gly58Arg missense NM_001368910.2:c.823G>A NP_001355839.1:p.Gly275Arg missense NM_001368911.2:c.625G>A NP_001355840.1:p.Gly209Arg missense NM_001368912.2:c.622G>A NP_001355841.1:p.Gly208Arg missense NM_001368913.2:c.622G>A NP_001355842.1:p.Gly208Arg missense NM_001368914.2:c.622G>A NP_001355843.1:p.Gly208Arg missense NM_001368915.2:c.580G>A NP_001355844.1:p.Gly194Arg missense NM_001368916.2:c.580G>A NP_001355845.1:p.Gly194Arg missense NM_001368917.2:c.580G>A NP_001355846.1:p.Gly194Arg missense NM_001368918.2:c.697G>A NP_001355847.1:p.Gly233Arg missense NM_001368919.2:c.697G>A NP_001355848.1:p.Gly233Arg missense NM_001368920.2:c.655G>A NP_001355849.1:p.Gly219Arg missense NM_001368921.2:c.421G>A NP_001355850.1:p.Gly141Arg missense NM_001368922.2:c.421G>A NP_001355851.1:p.Gly141Arg missense NM_001368923.2:c.421G>A NP_001355852.1:p.Gly141Arg missense NM_001368924.2:c.421G>A NP_001355853.1:p.Gly141Arg missense NM_001368925.2:c.421G>A NP_001355854.1:p.Gly141Arg missense NM_001368926.2:c.421G>A NP_001355855.1:p.Gly141Arg missense NM_001368927.2:c.421G>A NP_001355856.1:p.Gly141Arg missense NM_001368928.2:c.379G>A NP_001355857.1:p.Gly127Arg missense NM_001368929.2:c.172G>A NP_001355858.1:p.Gly58Arg missense NM_001368930.2:c.-24G>A 5 prime UTR NM_001604.6:c.622G>A NP_001595.2:p.Gly208Arg missense NR_160916.2:n.1044G>A non-coding transcript variant NR_160917.2:n.1049G>A non-coding transcript variant NC_000011.10:g.31794732C>T NC_000011.9:g.31816280C>T NG_008679.1:g.28230G>A LRG_720:g.28230G>A - Protein change
- G208R, G233R, G219R, G209R, G275R, G58R, G127R, G141R, G194R
- Other names
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- Canonical SPDI
- NC_000011.10:31794731:C:T
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Functional
consequence HelpThe effect of the variant on RNA or protein function, based on experimental evidence from submitters.
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Global minor allele
frequency (GMAF) HelpThe global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.
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Allele frequency
Help
The frequency of the allele represented by this VCV record.
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Exome Aggregation Consortium (ExAC) 0.00001
The Genome Aggregation Database (gnomAD) 0.00001
The Genome Aggregation Database (gnomAD), exomes 0.00001
Trans-Omics for Precision Medicine (TOPMed) 0.00001
NHLBI Exome Sequencing Project (ESP) Exome Variant Server 0.00008
- Links
Genes
| Gene | OMIM | ClinGen Gene Dosage Sensitivity Curation |
Variation Viewer
Help
Links to Variation Viewer, a genome browser to view variation data from NCBI databases. |
Related variants | ||
|---|---|---|---|---|---|---|
| HI score
Help
The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
TS score
Help
The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
Within gene
Help
The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants. |
All
Help
The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene. |
|||
| PAX6 | Sufficient evidence for dosage pathogenicity | Little evidence for dosage pathogenicity |
GRCh38 GRCh37 |
695 | 899 | |
Conditions - Germline
| Condition
Help
The condition for this variant-condition (RCV) record in ClinVar. |
Classification
Help
The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions) |
Review status
Help
The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. |
Last evaluated
Help
The most recent date that a submitter evaluated this variant for the condition. |
Variation/condition record
Help
The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page. |
|---|---|---|---|---|
| Likely benign (1) |
criteria provided, single submitter
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Dec 13, 2019 | RCV001034269.8 | |
| Uncertain significance (1) |
criteria provided, single submitter
|
Jan 30, 2020 | RCV001772208.2 |
Submissions - Germline
| Classification
Help
The submitted germline classification for each SCV record. (Last evaluated) |
Review status
Help
Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria) |
Condition
Help
The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant. |
Submitter
Help
The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar. |
More information
Help
This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter. |
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|---|---|---|---|---|---|
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Likely benign
(Dec 13, 2019)
|
criteria provided, single submitter
Method: clinical testing
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Aniridia 1
Irido-corneo-trabecular dysgenesis
Explanation for multiple conditions: Uncertain.
The variant was classified for several related diseases, possibly a spectrum of disease; the variant may be associated with one or more the diseases.
Affected status: unknown
Allele origin:
germline
|
Labcorp Genetics (formerly Invitae), Labcorp
Accession: SCV001197605.5
First in ClinVar: Apr 15, 2020 Last updated: Feb 28, 2024 |
|
|
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Uncertain significance
(Jan 30, 2020)
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criteria provided, single submitter
Method: clinical testing
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Not Provided
Affected status: yes
Allele origin:
germline
|
GeneDx
Accession: SCV002001785.2
First in ClinVar: Nov 06, 2021 Last updated: Mar 04, 2023 |
Comment:
In silico analysis, which includes protein predictors and evolutionary conservation, supports a deleterious effect; Has not been previously reported as pathogenic or benign in a … (more)
In silico analysis, which includes protein predictors and evolutionary conservation, supports a deleterious effect; Has not been previously reported as pathogenic or benign in a clinical setting to our knowledge (less)
|
Comment:
Germline Functional Evidence
| There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar. |
Comment:
In silico analysis, which includes protein predictors and evolutionary conservation, supports a deleterious effect; Has not been previously reported as pathogenic or benign in a clinical setting to our knowledge
Citations for germline classification of this variant
Help| There are no citations for germline classification of this variant in ClinVar. If you know of citations for this variation, please consider submitting that information to ClinVar. |
Text-mined citations for rs374396492 ...
HelpThese citations are identified by LitVar using
the rs number, so they may include citations for more than one variant
at this location. Please review the LitVar results carefully for your
variant of interest.
Record last updated Sep 29, 2024
This date represents the last time this VCV record was updated. The update may be due to an update to one of the included submitted records (SCVs), or due to an update that ClinVar made to the variant such as adding HGVS expressions or a rs number. So this date may be different from the date of the “most recent submission” reported at the top of this page.