ClinVar Genomic variation as it relates to human health
NM_000142.5(FGFR3):c.749C>G (p.Pro250Arg)
The aggregate germline classification for this variant, typically for a monogenic or Mendelian disorder as in the ACMG/AMP guidelines, or for response to a drug. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the aggregate classification.
Stars represent the aggregate review status, or the level of review supporting the aggregate germline classification for this VCV record. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. The number of submissions which contribute to this review status is shown in parentheses.
No data submitted for somatic clinical impact
No data submitted for oncogenicity
Variant Details
- Identifiers
-
NM_000142.5(FGFR3):c.749C>G (p.Pro250Arg)
Variation ID: 16340 Accession: VCV000016340.149
- Type and length
-
single nucleotide variant, 1 bp
- Location
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Cytogenetic: 4p16.3 4: 1801844 (GRCh38) [ NCBI UCSC ] 4: 1803571 (GRCh37) [ NCBI UCSC ]
- Timeline in ClinVar
-
First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.
Last submission Help The date of the most recent submission for each type of classification for this variant.
Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline Jun 9, 2014 Nov 24, 2024 Apr 22, 2024 - HGVS
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Nucleotide Protein Molecular
consequenceNM_000142.5:c.749C>G MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.
NP_000133.1:p.Pro250Arg missense NM_001163213.2:c.749C>G NP_001156685.1:p.Pro250Arg missense NM_001354809.2:c.749C>G NP_001341738.1:p.Pro250Arg missense NM_001354810.2:c.749C>G NP_001341739.1:p.Pro250Arg missense NM_022965.4:c.749C>G NP_075254.1:p.Pro250Arg missense NR_148971.2:n.1024C>G non-coding transcript variant NC_000004.12:g.1801844C>G NC_000004.11:g.1803571C>G NG_012632.1:g.13533C>G LRG_1021:g.13533C>G LRG_1021t1:c.749C>G LRG_1021p1:p.Pro250Arg LRG_1021t2:c.749C>G LRG_1021p2:p.Pro250Arg P22607:p.Pro250Arg - Protein change
- P250R
- Other names
- -
- Canonical SPDI
- NC_000004.12:1801843:C:G
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Functional
consequence HelpThe effect of the variant on RNA or protein function, based on experimental evidence from submitters.
- -
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Global minor allele
frequency (GMAF) HelpThe global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.
- -
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Allele frequency
Help
The frequency of the allele represented by this VCV record.
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Trans-Omics for Precision Medicine (TOPMed) 0.00001
- Links
Genes
Gene | OMIM | ClinGen Gene Dosage Sensitivity Curation |
Variation Viewer
Help
Links to Variation Viewer, a genome browser to view variation data from NCBI databases. |
Related variants | ||
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HI score
Help
The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
TS score
Help
The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
Within gene
Help
The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants. |
All
Help
The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene. |
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FGFR3 | No evidence available | No evidence available |
GRCh38 GRCh37 |
984 | 1134 |
Conditions - Germline
Condition
Help
The condition for this variant-condition (RCV) record in ClinVar. |
Classification
Help
The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions) |
Review status
Help
The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. |
Last evaluated
Help
The most recent date that a submitter evaluated this variant for the condition. |
Variation/condition record
Help
The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page. |
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Pathogenic (1) |
no assertion criteria provided
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Feb 1, 2009 | RCV000017747.34 | |
Pathogenic/Likely pathogenic (18) |
criteria provided, multiple submitters, no conflicts
|
Dec 28, 2022 | RCV000017746.59 | |
not provided (1) |
no classification provided
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Sep 19, 2013 | RCV000121075.10 | |
Pathogenic (1) |
criteria provided, single submitter
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Apr 30, 2015 | RCV000193831.20 | |
Pathogenic (10) |
criteria provided, multiple submitters, no conflicts
|
Dec 6, 2023 | RCV000436385.50 | |
Pathogenic (1) |
criteria provided, single submitter
|
Mar 21, 2023 | RCV000622712.13 | |
Pathogenic (1) |
criteria provided, single submitter
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Jan 1, 2017 | RCV000626772.10 | |
Pathogenic (1) |
criteria provided, single submitter
|
May 28, 2019 | RCV000987393.9 | |
Pathogenic (3) |
criteria provided, multiple submitters, no conflicts
|
Apr 22, 2024 | RCV001334261.13 | |
Pathogenic (1) |
criteria provided, single submitter
|
Jul 10, 2021 | RCV001813993.9 | |
Pathogenic (1) |
criteria provided, single submitter
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- | RCV002273933.9 | |
Pathogenic (1) |
criteria provided, single submitter
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Oct 21, 2021 | RCV002476986.8 | |
not provided (1) |
no classification provided
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- | RCV003483434.1 | |
FGFR3-related disorder
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Pathogenic (2) |
criteria provided, single submitter
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Mar 26, 2024 | RCV004554603.2 |
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Submissions - Germline
Classification
Help
The submitted germline classification for each SCV record. (Last evaluated) |
Review status
Help
Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria) |
Condition
Help
The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant. |
Submitter
Help
The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar. |
More information
Help
This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter. |
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Pathogenic
(Jan 01, 2017)
|
criteria provided, single submitter
Method: clinical testing
|
Generalized non-motor (absence) seizure
Coronal craniosynostosis Crouzon syndrome Facial asymmetry Infantile axial hypotonia Seizure Unilateral renal agenesis
Affected status: yes
Allele origin:
unknown
|
Centre for Mendelian Genomics, University Medical Centre Ljubljana
Accession: SCV000747475.1
First in ClinVar: May 12, 2018 Last updated: May 12, 2018 |
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Pathogenic
(Jul 31, 2018)
|
criteria provided, single submitter
Method: clinical testing
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Achondroplasia
Affected status: yes
Allele origin:
maternal
|
Baylor Genetics
Accession: SCV001527055.1
First in ClinVar: Mar 22, 2021 Last updated: Mar 22, 2021 |
Comment:
This variant was determined to be pathogenic according to ACMG Guidelines, 2015 [PMID:25741868]. The p.R250R pathogenic variant is the most common pathogenic variant found in … (more)
This variant was determined to be pathogenic according to ACMG Guidelines, 2015 [PMID:25741868]. The p.R250R pathogenic variant is the most common pathogenic variant found in MNKS patients with variable expressivity [PMID 9107244, 9279764] (less)
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Pathogenic
(Nov 27, 2020)
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criteria provided, single submitter
Method: clinical testing
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Not Provided
Affected status: yes
Allele origin:
germline
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GeneDx
Accession: SCV000521019.4
First in ClinVar: Mar 08, 2017 Last updated: Apr 17, 2019 |
Comment:
Reported in multiple individuals with features overlapping other craniosynostosis syndromes, including Pfeiffer syndrome, Crouzon syndrome, and Saethre-Chotzen syndrome (Bellus et al., 1996; Muenke et al., … (more)
Reported in multiple individuals with features overlapping other craniosynostosis syndromes, including Pfeiffer syndrome, Crouzon syndrome, and Saethre-Chotzen syndrome (Bellus et al., 1996; Muenke et al., 1997; Mulliken et al., 1999; Kruszka et al., 2016); however, some of the clinical features of individuals with the above syndromes may be rare in patients with this variant (Muenke et al., 1997); Reported in some individuals with radiographic abnormalities of hands and feet but without craniosynostosis, having normal head size or macrocephaly (Muenke et al., 1997; Kruszka et al., 2016a); Published functional studies demonstrate a damaging effect including disruption of endochondral and perichondrial ossification of the cranial base in mice (Laurita et al., 2011; Yasuda et al., 2012); Not observed at a significant frequency in large population cohorts (Lek et al., 2016); In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; This variant is associated with the following publications: (PMID: 11746040, 22622662, 24127277, 28551036, 31837199, 14613973, 26740388, 11424131, 12884424, 23325524, 19449410, 21204234, 22016144, 24705944, 15915095, 21233754, 21403567, 22446440, 23851839, 20592905, 24168007, 11197897, 24728327, 12087222, 20707699, 11428324, 8841188, 10541159, 27683237, 27568649, 26028288, 9279764, 9600744, 17103449, 17036334, 31111620, 31130284, 9042914, 20301588, 32238909, 31564432, 31019026, 32369273, 32382396, 9107244, 18000976, 32510873, 33502061) (less)
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Pathogenic
(Feb 04, 2022)
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criteria provided, single submitter
Method: clinical testing
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Muenke syndrome
Affected status: yes
Allele origin:
germline
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Seattle Children's Hospital Molecular Genetics Laboratory, Seattle Children's Hospital
Accession: SCV002525634.1
First in ClinVar: Jun 11, 2022 Last updated: Jun 11, 2022 |
Comment:
Muenke syndrome (MIM #602849) is diagnosed based on the presence of the recurrent p.Pro250Arg variant (PMID: 8841188).
Clinical Features:
Bicoronal synostosis (present)
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Pathogenic
(Sep 05, 2022)
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criteria provided, single submitter
Method: clinical testing
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Muenke syndrome
Affected status: yes
Allele origin:
germline
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MGZ Medical Genetics Center
Accession: SCV002581897.1
First in ClinVar: Oct 15, 2022 Last updated: Oct 15, 2022
Comment:
ACMG criteria applied: PS2, PP1_STR, PS3_MOD, PS4_MOD, PM2_SUP, PP3
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Number of individuals with the variant: 2
Sex: female
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Pathogenic
(Oct 21, 2021)
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criteria provided, single submitter
Method: clinical testing
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Achondroplasia
Malignant tumor of urinary bladder Colorectal cancer Hypochondroplasia LADD syndrome 1 Epidermal nevus Thanatophoric dysplasia type 1 Thanatophoric dysplasia, type 2 Germ cell tumor of testis Muenke syndrome Cervical cancer Camptodactyly-tall stature-scoliosis-hearing loss syndrome Crouzon syndrome-acanthosis nigricans syndrome Severe achondroplasia-developmental delay-acanthosis nigricans syndrome
Affected status: unknown
Allele origin:
unknown
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Fulgent Genetics, Fulgent Genetics
Accession: SCV000893665.2
First in ClinVar: Mar 31, 2019 Last updated: Dec 31, 2022 |
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Pathogenic
(Aug 26, 2022)
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criteria provided, single submitter
Method: clinical testing
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Muenke syndrome
Affected status: yes
Allele origin:
germline
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Laboratorio de Genetica e Diagnostico Molecular, Hospital Israelita Albert Einstein
Accession: SCV003807911.1
First in ClinVar: Mar 04, 2023 Last updated: Mar 04, 2023 |
Comment:
ACMG classification criteria: PS3 supporting, PS4 strong, PM2 supporting, PM6 strong, PP3 supporting
Number of individuals with the variant: 1
Clinical Features:
Coronal craniosynostosis (present) , Bilateral sensorineural hearing impairment (present)
Geographic origin: Brazil
Method: Paired-end whole-genome sequencing
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Pathogenic
(Dec 06, 2023)
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criteria provided, single submitter
Method: clinical testing
|
not provided
Affected status: unknown
Allele origin:
germline
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Labcorp Genetics (formerly Invitae), Labcorp
Accession: SCV000640386.8
First in ClinVar: Dec 26, 2017 Last updated: Feb 20, 2024 |
Comment:
This sequence change replaces proline, which is neutral and non-polar, with arginine, which is basic and polar, at codon 250 of the FGFR3 protein (p.Pro250Arg). … (more)
This sequence change replaces proline, which is neutral and non-polar, with arginine, which is basic and polar, at codon 250 of the FGFR3 protein (p.Pro250Arg). This variant is present in population databases (rs4647924, gnomAD 0.003%). This missense change has been observed in individual(s) with Muenke syndrome, but has also been identified in individuals with features of Saethre-Chotzen syndrome or other craniosynostosis syndromes (PMID: 9042914, 10094188, 10861678, 15915095, 26740388). In at least one individual the variant was observed to be de novo. It has also been observed to segregate with disease in related individuals. ClinVar contains an entry for this variant (Variation ID: 16340). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) has been performed at Invitae for this missense variant, however the output from this modeling did not meet the statistical confidence thresholds required to predict the impact of this variant on FGFR3 protein function. Experimental studies have shown that this missense change affects FGFR3 function (PMID: 14613973). For these reasons, this variant has been classified as Pathogenic. (less)
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Pathogenic
(Mar 31, 2022)
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criteria provided, single submitter
Method: clinical testing
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Muenke syndrome
(Autosomal dominant inheritance)
Affected status: yes
Allele origin:
germline
|
Victorian Clinical Genetics Services, Murdoch Childrens Research Institute
Additional submitter:
Shariant Australia, Australian Genomics
Accession: SCV003921920.2
First in ClinVar: May 06, 2023 Last updated: Nov 24, 2024 |
Comment:
Based on the classification scheme VCGS_Germline_v1.3.4, this variant is classified as Pathogenic. Following criteria are met: 0101 - Gain of function is a known mechanism … (more)
Based on the classification scheme VCGS_Germline_v1.3.4, this variant is classified as Pathogenic. Following criteria are met: 0101 - Gain of function is a known mechanism of disease in this gene and is associated with autosomal dominant skeletal dysplasias (OMIM). Additionally, autosomal recessive and dominant CATSHL syndrome (MIM#610474), is suspected to be due to variants with a loss of function, and dominant negative mechanism, respectively (PMID: 25614871, PMID: 24864036). (I) 0108 - This gene is associated with both recessive and dominant disease (OMIM). (I) 0112 - The condition associated with this gene has incomplete penetrance. Individuals with Muenke syndrome have been shown to inherit pathogenic variants from an asymptomatic parent (PMID: 26740388, PMID: 18000976). (I) 0115 - Variants in this gene are known to have variable expressivity. There is a wide range of clinical symptoms with variable expressivity in LADD and Muenke syndrome patients, even within the same family (PMID: 26740388, PMID: 16501574). (I) 0200 - Variant is predicted to result in a missense amino acid change from proline to arginine. (I) 0251 - This variant is heterozygous. (I) 0302 - Variant is present in gnomAD (v2) <0.001 for a dominant condition (2 heterozygotes, 0 homozygotes). (SP) 0309 - An alternative amino acid change at the same position has been observed in gnomAD (v2, v3) (2 heterozygotes, 0 homozygotes). (I) 0504 - Same amino acid change has been observed in placental mammals. (SB) 0604 - Variant is not located in an established domain, motif, hotspot or informative constraint region. (I) 0801 - This variant has strong previous evidence of pathogenicity in unrelated individuals. This variant is very well established as pathogenic, and has been reported in many individuals with Muenke syndrome with variable expressivity. Additionally, it has been observed less commonly in individuals with Saethre-Chotzen or craniosynostosis syndrome, and can be inherited from an asymptomatic parent (ClinVar, PMID: 26740388). (SP) 1206 - This variant has been shown to be paternally inherited (by trio analysis). (I) Legend: (SP) - Supporting pathogenic, (I) - Information, (SB) - Supporting benign (less)
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Pathogenic
(Apr 30, 2015)
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criteria provided, single submitter
Method: clinical testing
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Craniosynostosis
Affected status: yes
Allele origin:
germline
|
Genetic Services Laboratory, University of Chicago
Accession: SCV000247376.1
First in ClinVar: Oct 05, 2015 Last updated: Oct 05, 2015 |
|
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Pathogenic
(Jun 20, 2018)
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criteria provided, single submitter
Method: clinical testing
|
not provided
Affected status: unknown
Allele origin:
germline
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Eurofins Ntd Llc (ga)
Accession: SCV000861668.1
First in ClinVar: Mar 08, 2017 Last updated: Mar 08, 2017 |
Number of individuals with the variant: 1
Sex: mixed
|
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Pathogenic
(Apr 24, 2018)
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criteria provided, single submitter
Method: clinical testing
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MUENKE SYNDROME
Affected status: yes
Allele origin:
germline
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Rady Children's Institute for Genomic Medicine, Rady Children's Hospital San Diego
Accession: SCV000996136.1
First in ClinVar: Oct 19, 2019 Last updated: Oct 19, 2019 |
Comment:
This variant is a well-established cause of Muenke syndrome (PMID: 9042914, 26740388, 20301628). Functional characterization demonstrates that this missense change enhances ligand-binding in vitro compared … (more)
This variant is a well-established cause of Muenke syndrome (PMID: 9042914, 26740388, 20301628). Functional characterization demonstrates that this missense change enhances ligand-binding in vitro compared to wild-type and affects endochondral ossification (PMID: 14613973, 22016144). This variant is present as a heterozygous change in the gnomAD population database at a frequency of 0.001% (2/267,378) and is thus presumed to be rare. It is a non-conservative amino acid substitution and is predicted by multiple in silico tools to be deleterious to protein function. Based on the combined evidence, the c.749C>G (p.Pro250Arg) variant is classified as pathogenic. (less)
Number of individuals with the variant: 1
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Pathogenic
(-)
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criteria provided, single submitter
Method: clinical testing
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Muenke syndrome
Affected status: yes
Allele origin:
unknown
|
Institute for Genomic Statistics and Bioinformatics, University Hospital Bonn
Accession: SCV000999367.1
First in ClinVar: Nov 29, 2019 Last updated: Nov 29, 2019 |
Number of individuals with the variant: 1
Clinical Features:
Depressed nasal ridge (present) , Facial asymmetry (present) , Epicanthus (present) , Brachydactyly (present) , Bicoronal synostosis (present) , Abnormality of the helix (present) , … (more)
Depressed nasal ridge (present) , Facial asymmetry (present) , Epicanthus (present) , Brachydactyly (present) , Bicoronal synostosis (present) , Abnormality of the helix (present) , Anteverted nares (present) , Sparse and thin eyebrow (present) (less)
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Pathogenic
(May 28, 2019)
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criteria provided, single submitter
Method: clinical testing
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Hypochondroplasia
Affected status: unknown
Allele origin:
unknown
|
Mendelics
Accession: SCV001136681.1
First in ClinVar: Jan 09, 2020 Last updated: Jan 09, 2020 |
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Likely pathogenic
(Dec 11, 2019)
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criteria provided, single submitter
Method: research
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Muenke syndrome
(Autosomal dominant inheritance)
Affected status: yes
Allele origin:
paternal
|
Cavalleri Lab, Royal College of Surgeons in Ireland
Accession: SCV001160790.1
First in ClinVar: Apr 15, 2020 Last updated: Apr 15, 2020 |
Comment:
ACMG evidence PS3, PP2, PP3
|
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Pathogenic
(-)
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criteria provided, single submitter
Method: clinical testing
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Muenke syndrome
Affected status: yes
Allele origin:
germline
|
Department of Medical Genetics, Oslo University Hospital
Accession: SCV001437547.1
First in ClinVar: Nov 06, 2020 Last updated: Nov 06, 2020 |
Number of individuals with the variant: 14
Clinical Features:
Craniosynostosis (present)
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Pathogenic
(Nov 30, 2019)
|
criteria provided, single submitter
Method: clinical testing
|
Not provided
Affected status: yes
Allele origin:
germline
|
Blueprint Genetics
Accession: SCV001832430.1
First in ClinVar: Sep 08, 2021 Last updated: Sep 08, 2021
Comment:
Patient analyzed with Comprehensive Growth Disorders / Skeletal Dysplasias and Disorders Panel
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Pathogenic
(Jul 10, 2021)
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criteria provided, single submitter
Method: clinical testing
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Abnormality of the nervous system
Affected status: yes
Allele origin:
germline
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Kariminejad - Najmabadi Pathology & Genetics Center
Accession: SCV001755233.1
First in ClinVar: Jan 22, 2022 Last updated: Jan 22, 2022 |
|
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Pathogenic
(Mar 05, 2021)
|
criteria provided, single submitter
Method: clinical testing
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Muenke syndrome
Affected status: yes
Allele origin:
de novo
|
Institute of Human Genetics, University of Leipzig Medical Center
Accession: SCV001934470.1
First in ClinVar: Sep 26, 2021 Last updated: Sep 26, 2021 |
Comment:
This variant was identified as de novo (maternity and paternity confirmed).
|
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Pathogenic
(-)
|
criteria provided, single submitter
Method: clinical testing
|
FGFR3-related chondrodysplasia
Affected status: yes
Allele origin:
inherited
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Centre de Biologie Pathologie Génétique, Centre Hospitalier Universitaire de Lille
Accession: SCV002558894.1
First in ClinVar: Aug 15, 2022 Last updated: Aug 15, 2022 |
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Pathogenic
(Feb 28, 2022)
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criteria provided, single submitter
Method: clinical testing
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Muenke syndrome
Affected status: unknown
Allele origin:
germline
|
Johns Hopkins Genomics, Johns Hopkins University
Accession: SCV002570288.1
First in ClinVar: Sep 17, 2022 Last updated: Sep 17, 2022 |
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Pathogenic
(Dec 20, 2021)
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criteria provided, single submitter
Method: clinical testing
|
Muenke syndrome
Affected status: yes
Allele origin:
germline
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Laboratory of Medical Genetics, National & Kapodistrian University of Athens
Accession: SCV002577535.1
First in ClinVar: Oct 08, 2022 Last updated: Oct 08, 2022 |
Comment:
PS4, PM2, PP3, PP5
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Pathogenic
(Feb 22, 2021)
|
criteria provided, single submitter
Method: clinical testing
|
Muenke syndrome
Affected status: yes
Allele origin:
germline
|
Genetics and Molecular Pathology, SA Pathology
Additional submitter:
Shariant Australia, Australian Genomics
Accession: SCV002556384.2
First in ClinVar: Aug 08, 2022 Last updated: Dec 17, 2022 |
Comment:
The FGFR3 c.749C>G variant is a single nucleotide change in the FGFR3 gene that changes the amino acid proline at position 250 in the protein … (more)
The FGFR3 c.749C>G variant is a single nucleotide change in the FGFR3 gene that changes the amino acid proline at position 250 in the protein to arginine. This variant has been previously reported in several unrelated patients with Muenke syndrome (PMID: 9042914, 26740388, 20301628) (PS4_moderate). Functional characterization demonstrates that this missense change enhances ligand-binding in vitro compared to wild-type and affects endochondral ossification (PMID: 14613973, 22016144) (PS3). The variant was detected de novo in a patient with no family history of the disease (PS2). This variant has been reported in dbSNP (rs4647924) and is rare in population databases (2/270,300 in gnomAD, 0 homozygotes) (PM2). It is a non-conservative amino acid substitution and is predicted by multiple in silico tools to be deleterious to protein function (PP3). (less)
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Pathogenic
(Dec 28, 2022)
|
criteria provided, single submitter
Method: clinical testing
|
Muenke syndrome
(Autosomal dominant inheritance)
Affected status: yes
Allele origin:
germline
|
Institute of Medical Genetics and Applied Genomics, University Hospital Tübingen
Accession: SCV002771881.1
First in ClinVar: Dec 31, 2022 Last updated: Dec 31, 2022 |
Clinical Features:
Craniosynostosis syndrome (present) , Sagittal craniosynostosis (present) , Abnormality of the metopic suture (present)
|
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Pathogenic
(Oct 20, 2016)
|
criteria provided, single submitter
Method: clinical testing
|
Muenke syndrome
Affected status: yes
Allele origin:
germline
|
Genomic Diagnostic Laboratory, Division of Genomic Diagnostics, Children's Hospital of Philadelphia
Accession: SCV000328408.2
First in ClinVar: Jul 25, 2016 Last updated: Mar 04, 2023
Comment:
Clinical Testing
|
Number of individuals with the variant: 42
|
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Pathogenic
(-)
|
criteria provided, single submitter
Method: clinical testing
|
Muenke syndrome
(Autosomal dominant inheritance)
Affected status: yes
Allele origin:
inherited
|
Suma Genomics
Accession: SCV003852618.1
First in ClinVar: Apr 01, 2023 Last updated: Apr 01, 2023 |
|
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Pathogenic
(Sep 27, 2019)
|
criteria provided, single submitter
Method: clinical testing
|
not provided
Affected status: unknown
Allele origin:
germline
|
Revvity Omics, Revvity
Accession: SCV002023067.3
First in ClinVar: Nov 29, 2021 Last updated: Feb 04, 2024 |
|
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Pathogenic
(Mar 17, 2024)
|
criteria provided, single submitter
Method: research
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Achondroplasia
Affected status: unknown
Allele origin:
germline
|
Center for Genomic Medicine, King Faisal Specialist Hospital and Research Center
Accession: SCV004805169.2
First in ClinVar: Mar 30, 2024 Last updated: Apr 06, 2024 |
|
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Pathogenic
(Mar 21, 2023)
|
criteria provided, single submitter
Method: clinical testing
|
Inborn genetic diseases
Affected status: unknown
Allele origin:
germline
|
Ambry Genetics
Accession: SCV000740868.6
First in ClinVar: Apr 15, 2018 Last updated: May 01, 2024 |
Comment:
The c.749C>G (p.P250R) alteration is located in exon 7 (coding exon 6) of the FGFR3 gene. This alteration results from a C to G substitution … (more)
The c.749C>G (p.P250R) alteration is located in exon 7 (coding exon 6) of the FGFR3 gene. This alteration results from a C to G substitution at nucleotide position 749, causing the proline (P) at amino acid position 250 to be replaced by an arginine (R)._x000D_ _x000D_ Based on the available evidence, the FGFR3 c.749C>G (p.P250R) alteration is classified as pathogenic for Muenke syndrome. Based on data from gnomAD, the G allele has an overall frequency of 0.001% (2/270300) total alleles studied. The highest observed frequency was 0.003% (1/34950) of Latino alleles. The FGFR3 c.749C>G (p.P250R) alteration is a well-established disease-causing alteration of Muenke syndrome and the only reported pathogenic mutation in patients with Muenke syndrome (Bellus, 1996; Kruszka, 2016). This amino acid position is well conserved in available vertebrate species. Functional analysis of mouse models of Muenke syndrome harboring the mouse equivalent of the p.P250R alteration (p.P244R in mice) show that the alteration disrupts endochondral and perichondrial ossification in the cranial base (Laurita, 2011) as well as the temporomandibular joint development by reducing hedgehog signaling and endochondral ossification (Laurita, 2011; Yasuda, 2012). Surface plasmon resonance analysis and X-ray crystallography demonstrated enhanced binding of the mutant structure compared to wildtype (Ibrahimi, 2004). The in silico prediction for this alteration is inconclusive. Based on the available evidence, this alteration is classified as pathogenic. (less)
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Pathogenic
(Mar 26, 2024)
|
criteria provided, single submitter
Method: clinical testing
|
FGFR3-related disorder
Affected status: yes
Allele origin:
germline
|
Greenwood Genetic Center Diagnostic Laboratories, Greenwood Genetic Center
Accession: SCV005043957.1
First in ClinVar: May 19, 2024 Last updated: May 19, 2024 |
Comment:
PS2_Very Strong, PS3, PM1, PM5_Supporting
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Pathogenic
(Apr 22, 2024)
|
criteria provided, single submitter
Method: clinical testing
|
Achondroplasia
Affected status: unknown
Allele origin:
germline
|
Women's Health and Genetics/Laboratory Corporation of America, LabCorp
Accession: SCV005077050.1
First in ClinVar: Jul 15, 2024 Last updated: Jul 15, 2024 |
Comment:
Variant summary: FGFR3 c.749C>G (p.Pro250Arg) results in a non-conservative amino acid change in the encoded protein sequence. Three of five in-silico tools predict a damaging … (more)
Variant summary: FGFR3 c.749C>G (p.Pro250Arg) results in a non-conservative amino acid change in the encoded protein sequence. Three of five in-silico tools predict a damaging effect of the variant on protein function. The variant allele was found at a frequency of 4.2e-06 in 238970 control chromosomes. c.749C>G has been reported in the literature in multiple individuals affected with Muenke syndrome (example, Paumard-Hernandez_2014). These data indicate that the variant is very likely to be associated with disease. At least one publication reports experimental evidence evaluating an impact on protein function. The most pronounced variant effect results in enhancement in ligand binding in vitro (Ibrahimi_2004). The following publications have been ascertained in the context of this evaluation (PMID: 14613973, 25271085). ClinVar contains an entry for this variant (Variation ID: 16340). Based on the evidence outlined above, the variant was classified as pathogenic. (less)
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Pathogenic
(Jul 13, 2022)
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criteria provided, single submitter
Method: clinical testing
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not provided
Affected status: yes
Allele origin:
germline
|
Clinical Genetics Laboratory, Skane University Hospital Lund
Accession: SCV005197925.1
First in ClinVar: Aug 25, 2024 Last updated: Aug 25, 2024 |
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Pathogenic
(Apr 01, 2022)
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criteria provided, single submitter
Method: clinical testing
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not provided
Affected status: yes
Allele origin:
germline
|
CeGaT Center for Human Genetics Tuebingen
Accession: SCV001247231.26
First in ClinVar: May 12, 2020 Last updated: Oct 20, 2024 |
Comment:
FGFR3: PP1:Strong, PM2, PM5, PS3:Moderate, PP3, PP4, PS4:Supporting
Number of individuals with the variant: 8
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Pathogenic
(May 06, 2020)
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no assertion criteria provided
Method: clinical testing
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Muenke syndrome
Affected status: yes
Allele origin:
germline
|
Biochemical Molecular Genetic Laboratory, King Abdulaziz Medical City
Accession: SCV001469215.1
First in ClinVar: Jan 26, 2021 Last updated: Jan 26, 2021 |
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Pathogenic
(-)
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no assertion criteria provided
Method: clinical testing
|
not provided
Affected status: yes
Allele origin:
germline
|
Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center
Additional submitter:
Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen
Study: VKGL Data-share Consensus
Accession: SCV001969785.1 First in ClinVar: Oct 08, 2021 Last updated: Oct 08, 2021 |
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Pathogenic
(Feb 01, 2009)
|
no assertion criteria provided
Method: literature only
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MUENKE SYNDROME
Affected status: not provided
Allele origin:
germline
|
OMIM
Accession: SCV000038024.3
First in ClinVar: Apr 04, 2013 Last updated: Jun 09, 2024 |
Comment on evidence:
Bellus et al. (1996) described a pro250-to-arg (P250R) amino acid substitution in FGFR3 (caused by a C-to-G transversion at position 749 of the coding cDNA … (more)
Bellus et al. (1996) described a pro250-to-arg (P250R) amino acid substitution in FGFR3 (caused by a C-to-G transversion at position 749 of the coding cDNA sequence) in 10 unrelated patients with nonsyndromic autosomal dominant or sporadic craniosynostosis. This mutation is in the extracellular domain of the FGFR3 protein and occurs precisely at the position within the FGFR3 protein analogous to that of mutations in FGFR1 (P252R; 136350.0001) and FGFR2 (P253R; 176943.0011), previously reported in Pfeiffer (101600) and Apert syndromes, respectively. They pictured the craniofacial and extremity anomalies in some of these cases. Muenke et al. (1997) provided extensive information on a series of 61 individuals from 20 unrelated families in which coronal craniosynostosis is due to this mutation, defining a new clinical syndrome that is referred to as Muenke nonsyndromic coronal craniosynostosis (602849). At about the same time, Moloney et al. (1997) studied 26 patients with coronal craniosynostosis but no syndromic diagnosis to determine the frequency of the 749C-G (pro250-to-arg) mutation in FGFR3. Heterozygosity for the mutation was found in 8 (31%) of the 26 probands. In 2 cases, the mutation showed autosomal dominant transmission with evidence of variable expressivity; the remaining 6 cases were sporadic. Moloney et al. (1997) pointed out that the 749C nucleotide has one of the highest mutation rates described in the human genome. Reardon et al. (1997) reported 9 individuals with the P250R mutation. The authors documented a variable clinical presentation and contrasted this with the phenotype produced by the analogous mutation in FGFR1 (P252R; 136350.0001) and FGFR2 (P253R; 176943.0011). In particular, Reardon et al. (1997) noted mental retardation in 4 of the 9 cases, which they reported was unrelated to the management of the craniosynostosis. Reardon et al. (1997) suggested that there was a significant overlap between Saethre-Chotzen syndrome (101400), a common autosomal dominant condition of craniosynostosis and limb anomalies, and the phenotype produced by this mutation. They also noted unisutural craniosynostosis in 3 of the 9 cases to emphasize the caution with which the recurrence risks should be approached in craniosynostosis. In a study of 32 unrelated patients with features of Saethre-Chotzen syndrome, Paznekas et al. (1998) identified 7 families with the P250R mutation of the FGFR3 gene. The overlap in clinical features and the presence, in the same genes, of mutations for more than one craniosynostotic condition, such as Saethre-Chotzen, Crouzon, and Pfeiffer syndromes, suggested that the TWIST1 gene (601622), which is most frequently the site of mutations causing Saethre-Chotzen syndrome, and FGFRs are components of the same molecular pathway involved in the modulation of craniofacial and limb development in humans. The clinical features of the patients who were referred with the possible diagnosis of Saethre-Chotzen syndrome and who were found to have the FGFR3 mutation were not obviously different from those of individuals with the TWIST1 mutation. Golla et al. (1997) described a large German family with the P250R mutation in which there was also considerable phenotypic variability among individuals with the identical mutation. The clinical features in this family had been described by von Gernet et al. (1996). Gripp et al. (1998) found the P250R mutation in 4 of 37 patients with synostotic anterior plagiocephaly (literally 'oblique head'). In 3 mutation-positive patients with full parental studies, a parent with an extremely mild phenotype was found to carry the same mutation. None of the 6 patients with nonsynostotic plagiocephaly and none of the 4 patients with additional suture synostosis had the FGFR3 mutation. Hollway et al. (1998) found the P250R mutation in FGFR3 in an extensive family with craniosynostosis and deafness, extending through 5 generations. The deafness was congenital, bilateral, sensorineural, and of moderate degree. Four family members had craniosynostosis evident at clinical review; 2 required surgery, and 1 was symptomatically deaf. Thirteen other affected members of the family had no evidence of craniosynostosis but were either symptomatically deaf or required bilateral hearing aids. Hollway et al. (1998) thought that the craniosynostosis and deafness were not coincidentally associated and that the low penetrance of symptomatic craniosynostosis in this family raised the possibility that some families with the P250R mutation may present with deafness only. They pointed out that 1 locus for autosomal dominant nonsyndromal deafness (DFNA6; 600965) maps to 4p16.3, the location of the FGFR3 gene. Robin et al. (1998) described a woman who was completely clinically and radiologically normal but was carrying the P250R mutation. Graham et al. (1998) suggested that carpal-tarsal fusion may be the most specific finding for the FGFR3 mutation, being present in some individuals who did not have craniosynostosis. The patient reported by Robin et al. (1998) did not have carpal-tarsal fusion. Lajeunie et al. (1999) studied 62 patients with sporadic or familial forms of coronal craniosynostosis. The P250R mutation was identified in 20 probands from 27 unrelated families (74%), while only 6 of 35 sporadic cases (17%) were found to have this mutation. In both familial and sporadic cases, females were more severely affected, with 68% of females but only 35% of males having brachycephaly. In the most severely affected individuals, bicoronal craniosynostosis was associated with hypertelorism and marked bulging of the temporal fossae, features that Lajeunie et al. (1999) concluded might be helpful for clinical diagnosis. Lajeunie et al. (1999) concluded that the P250R mutation is most often familial and is associated with a more severe phenotype in females than in males. El Ghouzzi et al. (1999) found the P250R mutation in 2 of 22 cases of Saethre-Chotzen syndrome. The largest number of cases (16/22) were found to have mutations in the TWIST1 gene. In 4 of the 22 cases, no mutations were found in either TWIST1 or FGFR3. Roscioli et al. (2001) described a patient with severe premature calvarial synostosis and epidermal hyperplasia. Although the phenotype was consistent with that of a mild presentation of Beare-Stevenson syndrome (123790), molecular analysis of FGFR2 (176943) revealed wildtype sequence only. Molecular analysis of FGFR3 identified a heterozygous P250R missense mutation in both the proposita and her mildly affected father. The cutis gyrata in the daughter was located on the left palm, accompanied by deep skin creasing of both soles. In addition, a clearly demarcated darkened linear streak (initially macular) was present on the left forearm. At the age of 18 months, normal skin overlaid the neck and flexural regions. The father showed macrocephaly with some excessive creasing/thickening of the forehead skin and hypertelorism, but the skull was otherwise normal with no evidence of past premature craniosynostosis. This case extended the clinical spectrum of the P250R mutation to encompass epidermal hyperplasia and documented the phenomenon of activated FGFR receptors stimulating common downstream developmental pathways, resulting in overlapping clinical outcomes. Lowry et al. (2001) reported a family in which members with coronal craniosynostosis, skeletal abnormalities of the hands, and sensorineural hearing loss had the P250R mutation. One family member also had a Sprengel shoulder anomaly (184400) and multiple cervical spine anomalies consistent with Klippel-Feil anomaly (118100). The authors reported an additional case with an identical phenotype without the mutation. Rannan-Eliya et al. (2004) studied 19 cases of Muenke syndrome due to de novo P250R mutations in FGFR3. All 10 informative cases were of paternal origin; the average paternal age at birth for all 19 cases was 34.7 years. The authors noted that exclusive paternal origin and increased paternal age had previously been described for the G380R mutation in FGFR3 (134934.0001) and mutations in FGFR2 (e.g., S252W, 176943.0010). By surface plasmon resonance analysis and x-ray crystallography, Ibrahimi et al. (2004) characterized the effects of proline-to-arginine mutations in FGFR1c and FGFR3c on ligand binding. Both the FGFR1c P252R and FGFR3c P250R mutations exhibited an enhancement in ligand binding in comparison to their respective wildtype receptors. Binding of both mutant receptors to FGF9 (600921) was notably enhanced and implicated FGF9 as a potential pathophysiologic ligand for mutant FGFRs in mediating craniosynostosis. The crystal structure of P252R mutant in complex with FGF2 (134920) demonstrated that enhanced ligand binding was due to an additional set of receptor-ligand hydrogen bonds, similar to those gain-of-function interactions that occur in the crystal structure of FGFR2c P253R (176943.0011) mutant in complex with FGF2. However, unlike the P253R mutant, neither the FGFR1c P250R mutant nor the FGFR3c P250R mutant bound appreciably to FGF7 (148180) or FGF10 (602115). Ibrahimi et al. (2004) suggested that this might explain why limb phenotypes observed in type I Pfeiffer syndrome and Muenke syndrome are less severe than limb abnormalities observed in Apert syndrome. Almeida et al. (2009) reported a Portuguese patient with Muenke syndrome resulting from the P250R mutation who developed an osteochondroma in the proximal metaphysis of the left tibia. In a cohort of 182 Spanish probands with craniosynostosis, Paumard-Hernandez et al. (2015) found the most frequent mutation to be P250R in FGFR3, which was detected in 24 patients (13.2% of the cohort). The authors noted that this was somewhat lower than the 24% detected in a UK study of craniosynostosis patients by Wilkie et al. (2010). (less)
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Pathogenic
(Feb 01, 2009)
|
no assertion criteria provided
Method: literature only
|
SAETHRE-CHOTZEN SYNDROME
Affected status: not provided
Allele origin:
germline
|
OMIM
Accession: SCV000038025.3
First in ClinVar: Apr 04, 2013 Last updated: Jun 09, 2024 |
Comment on evidence:
Bellus et al. (1996) described a pro250-to-arg (P250R) amino acid substitution in FGFR3 (caused by a C-to-G transversion at position 749 of the coding cDNA … (more)
Bellus et al. (1996) described a pro250-to-arg (P250R) amino acid substitution in FGFR3 (caused by a C-to-G transversion at position 749 of the coding cDNA sequence) in 10 unrelated patients with nonsyndromic autosomal dominant or sporadic craniosynostosis. This mutation is in the extracellular domain of the FGFR3 protein and occurs precisely at the position within the FGFR3 protein analogous to that of mutations in FGFR1 (P252R; 136350.0001) and FGFR2 (P253R; 176943.0011), previously reported in Pfeiffer (101600) and Apert syndromes, respectively. They pictured the craniofacial and extremity anomalies in some of these cases. Muenke et al. (1997) provided extensive information on a series of 61 individuals from 20 unrelated families in which coronal craniosynostosis is due to this mutation, defining a new clinical syndrome that is referred to as Muenke nonsyndromic coronal craniosynostosis (602849). At about the same time, Moloney et al. (1997) studied 26 patients with coronal craniosynostosis but no syndromic diagnosis to determine the frequency of the 749C-G (pro250-to-arg) mutation in FGFR3. Heterozygosity for the mutation was found in 8 (31%) of the 26 probands. In 2 cases, the mutation showed autosomal dominant transmission with evidence of variable expressivity; the remaining 6 cases were sporadic. Moloney et al. (1997) pointed out that the 749C nucleotide has one of the highest mutation rates described in the human genome. Reardon et al. (1997) reported 9 individuals with the P250R mutation. The authors documented a variable clinical presentation and contrasted this with the phenotype produced by the analogous mutation in FGFR1 (P252R; 136350.0001) and FGFR2 (P253R; 176943.0011). In particular, Reardon et al. (1997) noted mental retardation in 4 of the 9 cases, which they reported was unrelated to the management of the craniosynostosis. Reardon et al. (1997) suggested that there was a significant overlap between Saethre-Chotzen syndrome (101400), a common autosomal dominant condition of craniosynostosis and limb anomalies, and the phenotype produced by this mutation. They also noted unisutural craniosynostosis in 3 of the 9 cases to emphasize the caution with which the recurrence risks should be approached in craniosynostosis. In a study of 32 unrelated patients with features of Saethre-Chotzen syndrome, Paznekas et al. (1998) identified 7 families with the P250R mutation of the FGFR3 gene. The overlap in clinical features and the presence, in the same genes, of mutations for more than one craniosynostotic condition, such as Saethre-Chotzen, Crouzon, and Pfeiffer syndromes, suggested that the TWIST1 gene (601622), which is most frequently the site of mutations causing Saethre-Chotzen syndrome, and FGFRs are components of the same molecular pathway involved in the modulation of craniofacial and limb development in humans. The clinical features of the patients who were referred with the possible diagnosis of Saethre-Chotzen syndrome and who were found to have the FGFR3 mutation were not obviously different from those of individuals with the TWIST1 mutation. Golla et al. (1997) described a large German family with the P250R mutation in which there was also considerable phenotypic variability among individuals with the identical mutation. The clinical features in this family had been described by von Gernet et al. (1996). Gripp et al. (1998) found the P250R mutation in 4 of 37 patients with synostotic anterior plagiocephaly (literally 'oblique head'). In 3 mutation-positive patients with full parental studies, a parent with an extremely mild phenotype was found to carry the same mutation. None of the 6 patients with nonsynostotic plagiocephaly and none of the 4 patients with additional suture synostosis had the FGFR3 mutation. Hollway et al. (1998) found the P250R mutation in FGFR3 in an extensive family with craniosynostosis and deafness, extending through 5 generations. The deafness was congenital, bilateral, sensorineural, and of moderate degree. Four family members had craniosynostosis evident at clinical review; 2 required surgery, and 1 was symptomatically deaf. Thirteen other affected members of the family had no evidence of craniosynostosis but were either symptomatically deaf or required bilateral hearing aids. Hollway et al. (1998) thought that the craniosynostosis and deafness were not coincidentally associated and that the low penetrance of symptomatic craniosynostosis in this family raised the possibility that some families with the P250R mutation may present with deafness only. They pointed out that 1 locus for autosomal dominant nonsyndromal deafness (DFNA6; 600965) maps to 4p16.3, the location of the FGFR3 gene. Robin et al. (1998) described a woman who was completely clinically and radiologically normal but was carrying the P250R mutation. Graham et al. (1998) suggested that carpal-tarsal fusion may be the most specific finding for the FGFR3 mutation, being present in some individuals who did not have craniosynostosis. The patient reported by Robin et al. (1998) did not have carpal-tarsal fusion. Lajeunie et al. (1999) studied 62 patients with sporadic or familial forms of coronal craniosynostosis. The P250R mutation was identified in 20 probands from 27 unrelated families (74%), while only 6 of 35 sporadic cases (17%) were found to have this mutation. In both familial and sporadic cases, females were more severely affected, with 68% of females but only 35% of males having brachycephaly. In the most severely affected individuals, bicoronal craniosynostosis was associated with hypertelorism and marked bulging of the temporal fossae, features that Lajeunie et al. (1999) concluded might be helpful for clinical diagnosis. Lajeunie et al. (1999) concluded that the P250R mutation is most often familial and is associated with a more severe phenotype in females than in males. El Ghouzzi et al. (1999) found the P250R mutation in 2 of 22 cases of Saethre-Chotzen syndrome. The largest number of cases (16/22) were found to have mutations in the TWIST1 gene. In 4 of the 22 cases, no mutations were found in either TWIST1 or FGFR3. Roscioli et al. (2001) described a patient with severe premature calvarial synostosis and epidermal hyperplasia. Although the phenotype was consistent with that of a mild presentation of Beare-Stevenson syndrome (123790), molecular analysis of FGFR2 (176943) revealed wildtype sequence only. Molecular analysis of FGFR3 identified a heterozygous P250R missense mutation in both the proposita and her mildly affected father. The cutis gyrata in the daughter was located on the left palm, accompanied by deep skin creasing of both soles. In addition, a clearly demarcated darkened linear streak (initially macular) was present on the left forearm. At the age of 18 months, normal skin overlaid the neck and flexural regions. The father showed macrocephaly with some excessive creasing/thickening of the forehead skin and hypertelorism, but the skull was otherwise normal with no evidence of past premature craniosynostosis. This case extended the clinical spectrum of the P250R mutation to encompass epidermal hyperplasia and documented the phenomenon of activated FGFR receptors stimulating common downstream developmental pathways, resulting in overlapping clinical outcomes. Lowry et al. (2001) reported a family in which members with coronal craniosynostosis, skeletal abnormalities of the hands, and sensorineural hearing loss had the P250R mutation. One family member also had a Sprengel shoulder anomaly (184400) and multiple cervical spine anomalies consistent with Klippel-Feil anomaly (118100). The authors reported an additional case with an identical phenotype without the mutation. Rannan-Eliya et al. (2004) studied 19 cases of Muenke syndrome due to de novo P250R mutations in FGFR3. All 10 informative cases were of paternal origin; the average paternal age at birth for all 19 cases was 34.7 years. The authors noted that exclusive paternal origin and increased paternal age had previously been described for the G380R mutation in FGFR3 (134934.0001) and mutations in FGFR2 (e.g., S252W, 176943.0010). By surface plasmon resonance analysis and x-ray crystallography, Ibrahimi et al. (2004) characterized the effects of proline-to-arginine mutations in FGFR1c and FGFR3c on ligand binding. Both the FGFR1c P252R and FGFR3c P250R mutations exhibited an enhancement in ligand binding in comparison to their respective wildtype receptors. Binding of both mutant receptors to FGF9 (600921) was notably enhanced and implicated FGF9 as a potential pathophysiologic ligand for mutant FGFRs in mediating craniosynostosis. The crystal structure of P252R mutant in complex with FGF2 (134920) demonstrated that enhanced ligand binding was due to an additional set of receptor-ligand hydrogen bonds, similar to those gain-of-function interactions that occur in the crystal structure of FGFR2c P253R (176943.0011) mutant in complex with FGF2. However, unlike the P253R mutant, neither the FGFR1c P250R mutant nor the FGFR3c P250R mutant bound appreciably to FGF7 (148180) or FGF10 (602115). Ibrahimi et al. (2004) suggested that this might explain why limb phenotypes observed in type I Pfeiffer syndrome and Muenke syndrome are less severe than limb abnormalities observed in Apert syndrome. Almeida et al. (2009) reported a Portuguese patient with Muenke syndrome resulting from the P250R mutation who developed an osteochondroma in the proximal metaphysis of the left tibia. In a cohort of 182 Spanish probands with craniosynostosis, Paumard-Hernandez et al. (2015) found the most frequent mutation to be P250R in FGFR3, which was detected in 24 patients (13.2% of the cohort). The authors noted that this was somewhat lower than the 24% detected in a UK study of craniosynostosis patients by Wilkie et al. (2010). (less)
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Pathogenic
(-)
|
no assertion criteria provided
Method: clinical testing
|
not provided
Affected status: yes
Allele origin:
germline
|
Genome Diagnostics Laboratory, Amsterdam University Medical Center
Study: VKGL Data-share Consensus
Accession: SCV001808971.1 First in ClinVar: Aug 27, 2021 Last updated: Aug 27, 2021 |
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Pathogenic
(-)
|
no assertion criteria provided
Method: clinical testing
|
not provided
Affected status: yes
Allele origin:
germline
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Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+
Additional submitter:
Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen
Study: VKGL Data-share Consensus
Accession: SCV001952168.1 First in ClinVar: Oct 02, 2021 Last updated: Oct 02, 2021 |
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Pathogenic
(Apr 01, 2023)
|
no assertion criteria provided
Method: clinical testing
|
Muenke syndrome
Affected status: yes
Allele origin:
germline
|
Clinical Laboratory Sciences Program (CLSP), King Saud bin Abdulaziz University for Health Sciences (KSAU-HS)
Accession: SCV003927907.1
First in ClinVar: Sep 16, 2023 Last updated: Sep 16, 2023 |
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Pathogenic
(Jun 03, 2024)
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no assertion criteria provided
Method: clinical testing
|
FGFR3-related condition
Affected status: unknown
Allele origin:
germline
|
PreventionGenetics, part of Exact Sciences
Accession: SCV005349592.1
First in ClinVar: Oct 08, 2024 Last updated: Oct 08, 2024 |
Comment:
The FGFR3 c.749C>G variant is predicted to result in the amino acid substitution p.Pro250Arg. This variant has been documented as one of the most common … (more)
The FGFR3 c.749C>G variant is predicted to result in the amino acid substitution p.Pro250Arg. This variant has been documented as one of the most common variants associated with syndromic craniosynostosis, and in particular with autosomal dominant Muenke syndrome (Muenke et al. 1997. PubMed ID: 9042914; Mulliken et al. 1999. PubMed ID: 10541159; Roscioli et al. 2013. PubMed ID: 24127277; Kruszka et al. 2016. PubMed ID: 26740388). Of note, this variant has been reported in one patient without craniosynostosis but with hearing loss and developmental delay (Patient 15, Table 1, Kruszka et al. 2016. PubMed ID: 26740388). This variant is reported in 0.0029% of alleles in individuals of Latino descent in gnomAD. This variant is interpreted as pathogenic. (less)
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not provided
(Sep 19, 2013)
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no classification provided
Method: reference population
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AllHighlyPenetrant
Affected status: unknown
Allele origin:
germline
|
ITMI
Accession: SCV000085243.1
First in ClinVar: Jun 09, 2014 Last updated: Jun 09, 2014
Comment:
Please see associated publication for description of ethnicities
|
Observation 1:
Ethnicity/Population group: Whole_cohort
Observation 2:
Ethnicity/Population group: African
Observation 3:
Ethnicity/Population group: African_European
Observation 4:
Ethnicity/Population group: Central_Asian
Observation 5:
Ethnicity/Population group: East_Asian
Observation 6:
Ethnicity/Population group: European
Observation 7:
Ethnicity/Population group: Hispanic
|
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not provided
(-)
|
no classification provided
Method: phenotyping only
|
Achondroplasia
Hypochondroplasia Thanatophoric dysplasia type 1 Muenke syndrome Crouzon syndrome-acanthosis nigricans syndrome
Explanation for multiple conditions: Uncertain.
The variant was classified for several related diseases, possibly a spectrum of disease; the variant may be associated with one or more the diseases.
Affected status: unknown
Allele origin:
unknown
|
GenomeConnect - Invitae Patient Insights Network
Accession: SCV004228601.1
First in ClinVar: Jan 26, 2024 Last updated: Jan 26, 2024 |
Comment:
Variant interpreted as Pathogenic and reported on 02-18-2019 by Lab Invitae. GenomeConnect-Invitae Patient Insights Network assertions are reported exactly as they appear on the patient-provided … (more)
Variant interpreted as Pathogenic and reported on 02-18-2019 by Lab Invitae. GenomeConnect-Invitae Patient Insights Network assertions are reported exactly as they appear on the patient-provided report from the testing laboratory. Registry team members make no attempt to reinterpret the clinical significance of the variant. Phenotypic details are available under supporting information. (less)
Clinical Features:
Phenotypic abnormality (present)
Indication for testing: Diagnostic
Age: 0-9 years
Sex: male
Method: Gene Panel Sequencing
Testing laboratory: Invitae
Date variant was reported to submitter: 2019-02-18
Testing laboratory interpretation: Pathogenic
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Germline Functional Evidence
There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar. |
Citations for germline classification of this variant
HelpTitle | Author | Journal | Year | Link |
---|---|---|---|---|
Muenke Syndrome. | Adam MP | - | 2023 | PMID: 20301588 |
A comparison of genomic diagnostics in adults and children with epilepsy and comorbid intellectual disability. | Benson KA | European journal of human genetics : EJHG | 2020 | PMID: 32238909 |
FGFR Craniosynostosis Syndromes Overview. | Adam MP | - | 2020 | PMID: 20301628 |
Muenke syndrome: An international multicenter natural history study. | Kruszka P | American journal of medical genetics. Part A | 2016 | PMID: 26740388 |
Expanding the mutation spectrum in 182 Spanish probands with craniosynostosis: identification and characterization of novel TCF12 variants. | Paumard-Hernández B | European journal of human genetics : EJHG | 2015 | PMID: 25271085 |
FGFR3 mutation frequency in 324 cases from the International Skeletal Dysplasia Registry. | Xue Y | Molecular genetics & genomic medicine | 2014 | PMID: 25614871 |
A novel homozygous mutation in FGFR3 causes tall stature, severe lateral tibial deviation, scoliosis, hearing impairment, camptodactyly, and arachnodactyly. | Makrythanasis P | Human mutation | 2014 | PMID: 24864036 |
Muenke syndrome mutation, FgfR3P²⁴⁴R, causes TMJ defects. | Yasuda T | Journal of dental research | 2012 | PMID: 22622662 |
The Muenke syndrome mutation (FgfR3P244R) causes cranial base shortening associated with growth plate dysfunction and premature perichondrial ossification in murine basicranial synchondroses. | Laurita J | Developmental dynamics : an official publication of the American Association of Anatomists | 2011 | PMID: 22016144 |
Clinical and molecular diagnosis of the skeletal dysplasias associated with mutations in the gene encoding Fibroblast Growth Factor Receptor 3 (FGFR3) in Portugal. | Almeida MR | Clinical genetics | 2009 | PMID: 19215249 |
Muenke syndrome (FGFR3-related craniosynostosis): expansion of the phenotype and review of the literature. | Doherty ES | American journal of medical genetics. Part A | 2007 | PMID: 18000976 |
Syndromic craniosynostosis: from history to hydrogen bonds. | Cunningham ML | Orthodontics & craniofacial research | 2007 | PMID: 17552943 |
Mutations in different components of FGF signaling in LADD syndrome. | Rohmann E | Nature genetics | 2006 | PMID: 16501574 |
FGFR3 P250R mutation increases the risk of reoperation in apparent 'nonsyndromic' coronal craniosynostosis. | Thomas GP | The Journal of craniofacial surgery | 2005 | PMID: 15915095 |
Paternal origin of FGFR3 mutations in Muenke-type craniosynostosis. | Rannan-Eliya SV | Human genetics | 2004 | PMID: 15241680 |
Proline to arginine mutations in FGF receptors 1 and 3 result in Pfeiffer and Muenke craniosynostosis syndromes through enhancement of FGF binding affinity. | Ibrahimi OA | Human molecular genetics | 2004 | PMID: 14613973 |
Syndrome of coronal craniosynostosis, Klippel-Feil anomaly, and sprengel shoulder with and without Pro250Arg mutation in the FGFR3 gene. | Lowry RB | American journal of medical genetics | 2001 | PMID: 11746040 |
Premature calvarial synostosis and epidermal hyperplasia (Beare-Stevenson syndrome-like anomalies) resulting from a P250R missense mutation in the gene encoding fibroblast growth factor receptor 3. | Roscioli T | American journal of medical genetics | 2001 | PMID: 11424131 |
Clinical findings in a patient with FGFR1 P252R mutation and comparison with the literature. | Roscioli T | American journal of medical genetics | 2000 | PMID: 10861678 |
Mutations within or upstream of the basic helix-loop-helix domain of the TWIST gene are specific to Saethre-Chotzen syndrome. | El Ghouzzi V | European journal of human genetics : EJHG | 1999 | PMID: 10094188 |
Sex related expressivity of the phenotype in coronal craniosynostosis caused by the recurrent P250R FGFR3 mutation. | Lajeunie E | Journal of medical genetics | 1999 | PMID: 9950359 |
Nonpenetrance in FGFR3-associated coronal synostosis syndrome. | Robin NH | American journal of medical genetics | 1998 | PMID: 9843059 |
Syndrome of coronal craniosynostosis with brachydactyly and carpal/tarsal coalition due to Pro250Arg mutation in FGFR3 gene. | Graham JM Jr | American journal of medical genetics | 1998 | PMID: 9600744 |
Genetic heterogeneity of Saethre-Chotzen syndrome, due to TWIST and FGFR mutations. | Paznekas WA | American journal of human genetics | 1998 | PMID: 9585583 |
Identification of a genetic cause for isolated unilateral coronal synostosis: a unique mutation in the fibroblast growth factor receptor 3. | Gripp KW | The Journal of pediatrics | 1998 | PMID: 9580776 |
Deafness due to Pro250Arg mutation of FGFR3. | Hollway GE | Lancet (London, England) | 1998 | PMID: 9525367 |
Craniosynostosis: genes and mechanisms. | Wilkie AO | Human molecular genetics | 1997 | PMID: 9300656 |
Phenotypic expression of the fibroblast growth factor receptor 3 (FGFR3) mutation P250R in a large craniosynostosis family. | Golla A | Journal of medical genetics | 1997 | PMID: 9279764 |
Craniosynostosis associated with FGFR3 pro250arg mutation results in a range of clinical presentations including unisutural sporadic craniosynostosis. | Reardon W | Journal of medical genetics | 1997 | PMID: 9279753 |
Prevalence of Pro250Arg mutation of fibroblast growth factor receptor 3 in coronal craniosynostosis. | Moloney DM | Lancet (London, England) | 1997 | PMID: 9107244 |
A unique point mutation in the fibroblast growth factor receptor 3 gene (FGFR3) defines a new craniosynostosis syndrome. | Muenke M | American journal of human genetics | 1997 | PMID: 9042914 |
Identical mutations in three different fibroblast growth factor receptor genes in autosomal dominant craniosynostosis syndromes. | Bellus GA | Nature genetics | 1996 | PMID: 8841188 |
Craniosynostosis suggestive of Saethre-Chotzen syndrome: clinical description of a large kindred and exclusion of candidate regions on 7p. | von Gernet S | American journal of medical genetics | 1996 | PMID: 8723106 |
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Text-mined citations for rs4647924 ...
HelpRecord last updated Nov 25, 2024
This date represents the last time this VCV record was updated. The update may be due to an update to one of the included submitted records (SCVs), or due to an update that ClinVar made to the variant such as adding HGVS expressions or a rs number. So this date may be different from the date of the “most recent submission” reported at the top of this page.