NM_004174.4(SLC9A3):c.2087A>G (p.Asn696Ser) AND Congenital secretory sodium diarrhea 8

Germline classification:: Likely benign (1 submission)
Last evaluated:: Sep 20, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004728671.1

Allele description [Variation Report for NM_004174.4(SLC9A3):c.2087A>G (p.Asn696Ser)]

NM_004174.4(SLC9A3):c.2087A>G (p.Asn696Ser)

Genes:

SLC9A3-AS1:SLC9A3 antisense RNA 1 [Gene - HGNC]
SLC9A3:solute carrier family 9 member A3 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

5p15.33

Genomic location:

Preferred name:

NM_004174.4(SLC9A3):c.2087A>G (p.Asn696Ser)

HGVS:

NC_000005.10:g.476073T>C
NG_046804.1:g.99356A>G
NM_001284351.3:c.2060A>G
NM_004174.4:c.2087A>GMANE SELECT
NP_001271280.1:p.Asn687Ser
NP_004165.2:p.Asn696Ser
NC_000005.9:g.476188T>C

Protein change:

N687S

Links:

dbSNP: rs372062509

NCBI 1000 Genomes Browser:

rs372062509

Molecular consequence:

NM_001284351.3:c.2060A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_004174.4:c.2087A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Congenital secretory sodium diarrhea 8
Identifiers:: MONDO: MONDO:0014808; MedGen: C5441928; Orphanet: 103908; OMIM: 616868

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV005328912	3billion	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely benign (Sep 20, 2024)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV005328912

3billion

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely benign
(Sep 20, 2024)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	no	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From 3billion, SCV005328912.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

The homozygous variant was found in patients diagnosed with another variant in a different gene, with no symptoms related to the gene containing the homozygous variant.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	no	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 8, 2024

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