NM_001376665.1(MINDY1):c.655G>A (p.Asp219Asn) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jun 17, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004640783.1

Allele description [Variation Report for NM_001376665.1(MINDY1):c.655G>A (p.Asp219Asn)]

NM_001376665.1(MINDY1):c.655G>A (p.Asp219Asn)

Gene:

MINDY1:MINDY lysine 48 deubiquitinase 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

1q21.3

Genomic location:

Preferred name:

NM_001376665.1(MINDY1):c.655G>A (p.Asp219Asn)

HGVS:

NC_000001.11:g.151000537C>T
NM_001040217.3:c.229G>A
NM_001163258.3:c.655G>A
NM_001163259.2:c.370G>A
NM_001163260.2:c.229G>A
NM_001319998.2:c.655G>A
NM_001376664.1:c.655G>A
NM_001376665.1:c.655G>AMANE SELECT
NM_001376666.1:c.655G>A
NM_001376667.1:c.655G>A
NM_001376668.1:c.655G>A
NM_001376669.1:c.577-573G>A
NM_001376670.1:c.577-573G>A
NM_001376671.1:c.157G>A
NM_001376672.1:c.157G>A
NM_001376673.1:c.157G>A
NM_001376674.1:c.157G>A
NM_018379.5:c.655G>A
NP_001035307.2:p.Asp77Asn
NP_001156730.3:p.Asp219Asn
NP_001156731.2:p.Asp124Asn
NP_001156732.2:p.Asp77Asn
NP_001306927.2:p.Asp219Asn
NP_001363593.1:p.Asp219Asn
NP_001363594.1:p.Asp219Asn
NP_001363595.1:p.Asp219Asn
NP_001363596.1:p.Asp219Asn
NP_001363597.1:p.Asp219Asn
NP_001363600.1:p.Asp53Asn
NP_001363601.1:p.Asp53Asn
NP_001363602.1:p.Asp53Asn
NP_001363603.1:p.Asp53Asn
NP_060849.3:p.Asp219Asn
NC_000001.10:g.150973013C>T
NM_001163258.1:c.799G>A

Protein change:

D124N

Molecular consequence:

NM_001376669.1:c.577-573G>A - intron variant - [Sequence Ontology: SO:0001627]
NM_001376670.1:c.577-573G>A - intron variant - [Sequence Ontology: SO:0001627]
NM_001040217.3:c.229G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001163258.3:c.655G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001163259.2:c.370G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001163260.2:c.229G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001319998.2:c.655G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001376664.1:c.655G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001376665.1:c.655G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001376666.1:c.655G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001376667.1:c.655G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001376668.1:c.655G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001376671.1:c.157G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001376672.1:c.157G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001376673.1:c.157G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001376674.1:c.157G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_018379.5:c.655G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV005134047	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Jun 17, 2024)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV005134047

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Jun 17, 2024)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV005134047.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.799G>A (p.D267N) alteration is located in exon 6 (coding exon 5) of the FAM63A gene. This alteration results from a G to A substitution at nucleotide position 799, causing the aspartic acid (D) at amino acid position 267 to be replaced by an asparagine (N). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Aug 11, 2024

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