NM_004936.4(CDKN2B):c.156+3_156+6del AND not specified

Germline classification:: Likely benign (1 submission)
Last evaluated:: Jul 31, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004595965.1

Allele description [Variation Report for NM_004936.4(CDKN2B):c.156+3_156+6del]

NM_004936.4(CDKN2B):c.156+3_156+6del

Genes:

LOC130001608:ATAC-STARR-seq lymphoblastoid silent region 19815 [Gene]
CDKN2B-AS1:CDKN2B antisense RNA 1 [Gene - OMIM - HGNC]
CDKN2B:cyclin dependent kinase inhibitor 2B [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

9p21.3

Genomic location:

Preferred name:

NM_004936.4(CDKN2B):c.156+3_156+6del

HGVS:

NC_000009.12:g.22008793_22008796del
NG_023297.1:g.5519_5522del
NG_181054.1:g.247_250del
NM_004936.4:c.156+3_156+6delMANE SELECT
NM_078487.2:c.159_162del
NP_511042.1:p.Ala54fs
NC_000009.11:g.22008792_22008795del
NM_004936.4:c.156+3_156+6delAGCTMANE SELECT

Protein change:

A54fs

Molecular consequence:

NM_078487.2:c.159_162del - frameshift variant - [Sequence Ontology: SO:0001589]
NM_004936.4:c.156+3_156+6del - splice donor variant - [Sequence Ontology: SO:0001575]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV005090832	Center for Genomic Medicine, Rigshospitalet, Copenhagen University Hospital	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely benign (Jul 31, 2024)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV005090832

Center for Genomic Medicine, Rigshospitalet, Copenhagen University Hospital

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely benign
(Jul 31, 2024)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Center for Genomic Medicine, Rigshospitalet, Copenhagen University Hospital, SCV005090832.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Aug 4, 2024

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