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NC_000001.10:g.(?_63090910)_(63902691_?)dup AND ALG6-congenital disorder of glycosylation 1C

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Aug 24, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004579595.2

Allele description [Variation Report for NC_000001.10:g.(?_63090910)_(63902691_?)dup]

NC_000001.10:g.(?_63090910)_(63902691_?)dup

Genes:
ALG6:ALG6 alpha-1,3-glucosyltransferase [Gene - OMIM - HGNC]
ATG4C:autophagy related 4C cysteine peptidase [Gene - OMIM - HGNC]
DOCK7:dedicator of cytokinesis 7 [Gene - OMIM - HGNC]
FOXD3:forkhead box D3 [Gene - OMIM - HGNC]
Variant type:
Duplication
Cytogenetic location:
1p31.3
Genomic location:
Chr1: 63090910 - 63902691 (on Assembly GRCh37)
Preferred name:
NC_000001.10:g.(?_63090910)_(63902691_?)dup
HGVS:
NC_000001.10:g.(?_63090910)_(63902691_?)dup

Condition(s)

Name:
ALG6-congenital disorder of glycosylation 1C (CDG1C)
Synonyms:
CDG Ic; CARBOHYDRATE-DEFICIENT GLYCOPROTEIN SYNDROME, TYPE I, WITH DEFICIENT GLYCOSYLATION OF DOLICHOL-LINKED OLIGOSACCHARIDE; CARBOHYDRATE-DEFICIENT GLYCOPROTEIN SYNDROME, TYPE V; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0011291; MedGen: C2930997; Orphanet: 79320; OMIM: 603147

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV005066474Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))		Uncertain significance
(Aug 24, 2023) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group, Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV005066474.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. This variant has not been reported in the literature in individuals affected with ALG6-related conditions. A copy number gain of the genomic region encompassing the full coding sequence of the ALG6 gene has been identified. The boundaries of this event are unknown as they extend beyond the assayed region for this gene and therefore may encompass additional genes. As the precise location of this event is unknown, it may be in tandem or it may be located elsewhere in the genome.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024