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NM_002801.4(PSMB10):c.601G>C (p.Gly201Arg) AND Immunodeficiency 121 with autoinflammation

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jun 11, 2024
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004577064.1

Allele description [Variation Report for NM_002801.4(PSMB10):c.601G>C (p.Gly201Arg)]

NM_002801.4(PSMB10):c.601G>C (p.Gly201Arg)

Gene:
PSMB10:proteasome 20S subunit beta 10 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16q22.1
Genomic location:
Preferred name:
NM_002801.4(PSMB10):c.601G>C (p.Gly201Arg)
Other names:
PSMB10, GLY201ARG, 601G-C
HGVS:
  • NC_000016.10:g.67934906C>G
  • NG_051639.1:g.1970G>C
  • NM_002801.4:c.601G>CMANE SELECT
  • NP_002792.1:p.Gly201Arg
  • NC_000016.9:g.67968809C>G
Protein change:
G201R; GLY201ARG
Links:
OMIM: 176847.0007
Molecular consequence:
  • NM_002801.4:c.601G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Immunodeficiency 121 with autoinflammation
Identifiers:
MONDO: MONDO:0971001; MedGen: C5935616; OMIM: 620807

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV005060854OMIM
no assertion criteria provided
Pathogenic
(Jun 11, 2024)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Expanding the PRAAS spectrum: De novo mutations of immunoproteasome subunit β-type 10 in six infants with SCID-Omenn syndrome.

van der Made CI, Kersten S, Chorin O, Engelhardt KR, Ramakrishnan G, Griffin H, Schim van der Loeff I, Venselaar H, Rothschild AR, Segev M, Schuurs-Hoeijmakers JHM, Mantere T, Essers R, Esteki MZ, Avital AL, Loo PS, Simons A, Pfundt R, Warris A, Seyger MM, van de Veerdonk FL, Netea MG, et al.

Am J Hum Genet. 2024 Apr 4;111(4):791-804. doi: 10.1016/j.ajhg.2024.02.013. Epub 2024 Mar 18.

PubMed [citation]
PMID:
38503300
PMCID:
PMC11023912

Details of each submission

From OMIM, SCV005060854.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In a 16-year-old boy (P3) of European descent with immunodeficiency-121 with autoinflammation (IMD121; 620807), van der Made et al. (2024) identified a de novo heterozygous c.601G-C transversion (c.601G-C, NM_002801) in exon 7, resulting in a gly201-to-arg (G201R) substitution at a highly conserved residue. The mutation, which was found by whole-exome sequencing and confirmed by Sanger sequencing, was not present in public databases, including dbSNP, ExAC, and gnomAD. The mutation resulted in the same amino acid substitution as a different point mutation (c.601G-A; 176847.0006) identified in other patients with the disorder. Immunoblot analysis of fibroblasts derived from the patient showed an abnormal PSMB10 band, suggesting that the mutant protein had altered physiochemical characteristics that could be consistent with a dominant-negative effect. Functional studies of the variant were not performed. The patient (P3) died at 16 years of age.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 24, 2024