NM_006767.4(LZTR1):c.370GTC[1] (p.Val125del) AND Schwannomatosis 2

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Nov 22, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004569841.1

Allele description [Variation Report for NM_006767.4(LZTR1):c.370GTC[1] (p.Val125del)]

NM_006767.4(LZTR1):c.370GTC[1] (p.Val125del)

Gene:

LZTR1:leucine zipper like post translational regulator 1 [Gene - OMIM - HGNC]

Variant type:

Microsatellite

Cytogenetic location:

22q11.21

Genomic location:

Preferred name:

NM_006767.4(LZTR1):c.370GTC[1] (p.Val125del)

HGVS:

NC_000022.11:g.20987553GTC[1]
NC_000022.11:g.20987553_20987555GTC[1]
NG_034193.1:g.10285GTC[1]
NM_006767.4:c.370GTC[1]MANE SELECT
NP_006758.2:p.Val125del
LRG_989t1:c.370GTC[1]
LRG_989:g.10285GTC[1]
LRG_989p1:p.Val125del
NC_000022.10:g.21341841_21341843del
NC_000022.10:g.21341842GTC[1]
NM_006767.3:c.373_375del
NM_006767.3:c.373_375delGTC
NM_006767.4:c.373_375delMANE SELECT

Protein change:

V125del

Links:

dbSNP: rs755783378

NCBI 1000 Genomes Browser:

rs755783378

Molecular consequence:

NM_006767.4:c.370GTC[1] - inframe_deletion - [Sequence Ontology: SO:0001822]

Condition(s)

Name:: Schwannomatosis 2 (SWN2)
Synonyms:: Schwannomatosis-2, susceptibility to
Identifiers:: MONDO: MONDO:0014299; MedGen: C3810283; Orphanet: 93921; OMIM: 615670

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV005060705	Baylor Genetics	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Nov 22, 2023)	unknown	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV005060705

Baylor Genetics

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Nov 22, 2023)

unknown

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Baylor Genetics, SCV005060705.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 20, 2024

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