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NM_002230.4(JUP):c.1596G>A (p.Val532=) AND Cardiovascular phenotype

Germline classification:
Likely benign (1 submission)
Last evaluated:
Feb 1, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004513424.1

Allele description [Variation Report for NM_002230.4(JUP):c.1596G>A (p.Val532=)]

NM_002230.4(JUP):c.1596G>A (p.Val532=)

Gene:
JUP:junction plakoglobin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17q21.2
Genomic location:
Preferred name:
NM_002230.4(JUP):c.1596G>A (p.Val532=)
HGVS:
  • NC_000017.11:g.41758772C>T
  • NG_009090.2:g.32941G>A
  • NM_001352773.2:c.1596G>A
  • NM_001352774.2:c.1596G>A
  • NM_001352775.2:c.1596G>A
  • NM_001352776.2:c.1596G>A
  • NM_001352777.2:c.1596G>A
  • NM_002230.4:c.1596G>AMANE SELECT
  • NM_021991.4:c.1596G>A
  • NP_001339702.1:p.Val532=
  • NP_001339703.1:p.Val532=
  • NP_001339704.1:p.Val532=
  • NP_001339705.1:p.Val532=
  • NP_001339706.1:p.Val532=
  • NP_002221.1:p.Val532=
  • NP_002221.1:p.Val532=
  • NP_068831.1:p.Val532=
  • NP_068831.1:p.Val532=
  • LRG_401t1:c.1596G>A
  • LRG_401t2:c.1596G>A
  • LRG_401:g.32941G>A
  • LRG_401p1:p.Val532=
  • LRG_401p2:p.Val532=
  • NC_000017.10:g.39915024C>T
  • NM_002230.2:c.1596G>A
  • NM_021991.2:c.1596G>A
Molecular consequence:
  • NM_001352773.2:c.1596G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001352774.2:c.1596G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001352775.2:c.1596G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001352776.2:c.1596G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001352777.2:c.1596G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_002230.4:c.1596G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_021991.4:c.1596G>A - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:
Cardiovascular phenotype
Identifiers:
MedGen: CN230736

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV005018053Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Likely benign
(Feb 1, 2024) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV005018053.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 7, 2024