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NM_021930.6(RINT1):c.79G>T (p.Glu27Ter) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Aug 31, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004360454.1

Allele description [Variation Report for NM_021930.6(RINT1):c.79G>T (p.Glu27Ter)]

NM_021930.6(RINT1):c.79G>T (p.Glu27Ter)

Gene:
RINT1:RAD50 interactor 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7q22.3
Genomic location:
Preferred name:
NM_021930.6(RINT1):c.79G>T (p.Glu27Ter)
HGVS:
  • NC_000007.14:g.105532860G>T
  • NG_051951.1:g.5780G>T
  • NG_112118.1:g.564G>T
  • NG_112118.2:g.589G>T
  • NM_001346599.2:c.-19G>T
  • NM_001346600.2:c.-941G>T
  • NM_001346601.2:c.-844G>T
  • NM_001346603.2:c.-464G>T
  • NM_021930.6:c.79G>TMANE SELECT
  • NP_068749.3:p.Glu27Ter
  • NC_000007.13:g.105173307G>T
  • NM_021930.4:c.79G>T
  • NR_144478.2:n.194G>T
Protein change:
E27*
Molecular consequence:
  • NM_001346599.2:c.-19G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001346600.2:c.-941G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001346601.2:c.-844G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001346603.2:c.-464G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NR_144478.2:n.194G>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NM_021930.6:c.79G>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004090050Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)
Uncertain significance
(Aug 31, 2023)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV004090050.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.E27* variant (also known as c.79G>T), located in coding exon 2 of the RINT1 gene, results from a G to T substitution at nucleotide position 79. This changes the amino acid from a glutamic acid to a stop codon within coding exon 2. This alteration is expected to result in loss of function by premature protein truncation or nonsense-mediated mRNA decay. The evidence for this gene-disease relationship is limited; therefore, the clinical significance of this alteration is unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 24, 2024