NM_001287492.4(FIGNL1):c.40T>C (p.Trp14Arg) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jul 13, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004079413.1

Allele description [Variation Report for NM_001287492.4(FIGNL1):c.40T>C (p.Trp14Arg)]

NM_001287492.4(FIGNL1):c.40T>C (p.Trp14Arg)

Genes:

LOC126860033:CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:50514049-50515248 [Gene]
FIGNL1:fidgetin like 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

7p12.2

Genomic location:

Preferred name:

NM_001287492.4(FIGNL1):c.40T>C (p.Trp14Arg)

HGVS:

NC_000007.14:g.50447248A>G
NG_051949.1:g.8159T>C
NG_084534.1:g.998A>G
NM_001042762.5:c.40T>C
NM_001287492.4:c.40T>CMANE SELECT
NM_001287493.3:c.40T>C
NM_001287494.4:c.40T>C
NM_001287495.3:c.40T>C
NM_001287496.4:c.-179T>C
NM_001346558.3:c.-179T>C
NM_001346559.3:c.-179T>C
NM_001346560.3:c.40T>C
NM_001346561.3:c.40T>C
NM_001346562.3:c.40T>C
NM_001346563.3:c.40T>C
NM_001346564.3:c.40T>C
NM_001346565.3:c.40T>C
NM_022116.7:c.40T>C
NP_001036227.1:p.Trp14Arg
NP_001274421.1:p.Trp14Arg
NP_001274422.1:p.Trp14Arg
NP_001274423.1:p.Trp14Arg
NP_001274424.1:p.Trp14Arg
NP_001333489.1:p.Trp14Arg
NP_001333490.1:p.Trp14Arg
NP_001333491.1:p.Trp14Arg
NP_001333492.1:p.Trp14Arg
NP_001333493.1:p.Trp14Arg
NP_001333494.1:p.Trp14Arg
NP_071399.2:p.Trp14Arg
NC_000007.13:g.50514946A>G
NM_001042762.1:c.40T>C

Protein change:

W14R

Molecular consequence:

NM_001287496.4:c.-179T>C - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001346558.3:c.-179T>C - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001346559.3:c.-179T>C - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001042762.5:c.40T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001287492.4:c.40T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001287493.3:c.40T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001287494.4:c.40T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001287495.3:c.40T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001346560.3:c.40T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001346561.3:c.40T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001346562.3:c.40T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001346563.3:c.40T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001346564.3:c.40T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001346565.3:c.40T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_022116.7:c.40T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003535546	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Jul 13, 2021)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003535546

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Jul 13, 2021)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV003535546.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.40T>C (p.W14R) alteration is located in exon 4 (coding exon 1) of the FIGNL1 gene. This alteration results from a T to C substitution at nucleotide position 40, causing the tryptophan (W) at amino acid position 14 to be replaced by an arginine (R). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 24, 2024

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