NM_002336.3(LRP6):c.3411A>G (p.Ile1137Met) AND Inborn genetic diseases

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Nov 9, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004066748.1

Allele description [Variation Report for NM_002336.3(LRP6):c.3411A>G (p.Ile1137Met)]

NM_002336.3(LRP6):c.3411A>G (p.Ile1137Met)

Gene:

LRP6:LDL receptor related protein 6 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

12p13.2

Genomic location:

Preferred name:

NM_002336.3(LRP6):c.3411A>G (p.Ile1137Met)

HGVS:

NC_000012.12:g.12138521T>C
NG_016168.2:g.133357A>G
NM_001414244.1:c.3504A>G
NM_001414245.1:c.3411A>G
NM_001414246.1:c.3411A>G
NM_001414247.1:c.3213A>G
NM_001414248.1:c.3411A>G
NM_001414249.1:c.3411A>G
NM_001414250.1:c.3411A>G
NM_001414251.1:c.3411A>G
NM_001414252.1:c.2958A>G
NM_001414253.1:c.2958A>G
NM_001414254.1:c.2958A>G
NM_001414255.1:c.2904A>G
NM_002336.2:c.3411A>G
NM_002336.3:c.3411A>GMANE SELECT
NP_001401173.1:p.Ile1168Met
NP_001401174.1:p.Ile1137Met
NP_001401175.1:p.Ile1137Met
NP_001401176.1:p.Ile1071Met
NP_001401177.1:p.Ile1137Met
NP_001401178.1:p.Ile1137Met
NP_001401179.1:p.Ile1137Met
NP_001401180.1:p.Ile1137Met
NP_001401181.1:p.Ile986Met
NP_001401182.1:p.Ile986Met
NP_001401183.1:p.Ile986Met
NP_001401184.1:p.Ile968Met
NP_002327.2:p.Ile1137Met
NC_000012.11:g.12291455T>C
NR_182264.1:n.3720A>G

Protein change:

I1071M

Molecular consequence:

NM_001414244.1:c.3504A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001414245.1:c.3411A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001414246.1:c.3411A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001414247.1:c.3213A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001414248.1:c.3411A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001414249.1:c.3411A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001414250.1:c.3411A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001414251.1:c.3411A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001414252.1:c.2958A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001414253.1:c.2958A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001414254.1:c.2958A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001414255.1:c.2904A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_002336.3:c.3411A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Inborn genetic diseases
Identifiers:: MeSH: D030342; MedGen: C0950123

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004899375	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Nov 9, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004899375

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Nov 9, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV004899375.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.3411A>G (p.I1137M) alteration is located in exon 16 (coding exon 16) of the LRP6 gene. This alteration results from a A to G substitution at nucleotide position 3411, causing the isoleucine (I) at amino acid position 1137 to be replaced by a methionine (M). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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