NM_006904.7(PRKDC):c.11787G>A (p.Met3929Ile) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jan 4, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004050844.1

Allele description [Variation Report for NM_006904.7(PRKDC):c.11787G>A (p.Met3929Ile)]

NM_006904.7(PRKDC):c.11787G>A (p.Met3929Ile)

Gene:

PRKDC:protein kinase, DNA-activated, catalytic subunit [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

8q11.21

Genomic location:

Preferred name:

NM_006904.7(PRKDC):c.11787G>A (p.Met3929Ile)

HGVS:

NC_000008.11:g.47778525C>T
NG_023435.1:g.186659G>A
NM_001081640.2:c.11694G>A
NM_006904.7:c.11787G>AMANE SELECT
NP_001075109.1:p.Met3898Ile
NP_008835.5:p.Met3929Ile
NP_008835.5:p.Met3929Ile
LRG_162t1:c.11787G>A
LRG_162:g.186659G>A
LRG_162p1:p.Met3929Ile
NC_000008.10:g.48691086C>T
NM_006904.6:c.11787G>A

Protein change:

M3898I

Molecular consequence:

NM_001081640.2:c.11694G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_006904.7:c.11787G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002639047	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Jan 4, 2022)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002639047

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Jan 4, 2022)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV002639047.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The p.M3929I variant (also known as c.11787G>A), located in coding exon 83 of the PRKDC gene, results from a G to A substitution at nucleotide position 11787. The methionine at codon 3929 is replaced by isoleucine, an amino acid with highly similar properties. This amino acid position is conserved. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 24, 2024

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