NM_033305.3(VPS13A):c.505C>T (p.Arg169Trp) AND Inborn genetic diseases

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Oct 4, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004039447.1

Allele description [Variation Report for NM_033305.3(VPS13A):c.505C>T (p.Arg169Trp)]

NM_033305.3(VPS13A):c.505C>T (p.Arg169Trp)

Gene:

VPS13A:vacuolar protein sorting 13 homolog A [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

9q21.2

Genomic location:

Preferred name:

NM_033305.3(VPS13A):c.505C>T (p.Arg169Trp)

HGVS:

NC_000009.12:g.77210625C>T
NG_008931.1:g.38181C>T
NM_001018037.2:c.505C>T
NM_001018038.3:c.505C>T
NM_015186.4:c.505C>T
NM_033305.3:c.505C>TMANE SELECT
NP_001018047.1:p.Arg169Trp
NP_001018048.1:p.Arg169Trp
NP_056001.1:p.Arg169Trp
NP_150648.2:p.Arg169Trp
NC_000009.11:g.79825541C>T
NM_033305.2:c.505C>T

Protein change:

R169W

Links:

dbSNP: rs139380985

NCBI 1000 Genomes Browser:

rs139380985

Molecular consequence:

NM_001018037.2:c.505C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_001018038.3:c.505C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_015186.4:c.505C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_033305.3:c.505C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Inborn genetic diseases
Identifiers:: MeSH: D030342; MedGen: C0950123

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004978095	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Oct 4, 2022)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004978095

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Oct 4, 2022)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV004978095.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.505C>T (p.R169W) alteration is located in exon 7 (coding exon 7) of the VPS13A gene. This alteration results from a C to T substitution at nucleotide position 505, causing the arginine (R) at amino acid position 169 to be replaced by a tryptophan (W). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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