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NM_001360016.2(G6PD):c.-32G>T AND multiple conditions

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Nov 1, 2023
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004018057.2

Allele description [Variation Report for NM_001360016.2(G6PD):c.-32G>T]

NM_001360016.2(G6PD):c.-32G>T

Genes:
LOC129929052:ATAC-STARR-seq lymphoblastoid silent region 21114 [Gene]
G6PD:glucose-6-phosphate dehydrogenase [Gene - OMIM - HGNC]
IKBKG:inhibitor of nuclear factor kappa B kinase regulatory subunit gamma [Gene - OMIM - HGNC]
LOC107181288:origin of replication in promoter of G6PD [Gene]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq28
Genomic location:
Preferred name:
NM_001360016.2(G6PD):c.-32G>T
HGVS:
  • NC_000023.11:g.154546812C>A
  • NG_009015.2:g.5761G>T
  • NG_009896.1:g.9569C>A
  • NG_046714.1:g.402C>A
  • NG_162109.1:g.185C>A
  • NM_000402.4:c.59G>T
  • NM_001042351.3:c.-8-649G>T
  • NM_001099856.6:c.189+4360C>A
  • NM_001321396.3:c.-16+4425C>A
  • NM_001360016.2:c.-32G>TMANE SELECT
  • NM_001377312.1:c.-15-5176C>A
  • NM_001377313.1:c.-15-5176C>A
  • NP_000393.4:p.Gly20Val
  • LRG_70:g.9569C>A
  • NC_000023.10:g.153775027C>A
Protein change:
G20V
Molecular consequence:
  • NM_001360016.2:c.-32G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001042351.3:c.-8-649G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001099856.6:c.189+4360C>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001321396.3:c.-16+4425C>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001377312.1:c.-15-5176C>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001377313.1:c.-15-5176C>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000402.4:c.59G>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Malaria, susceptibility to
Identifiers:
MONDO: MONDO:0021024; MedGen: C1970028; Orphanet: 673; OMIM: 611162
Name:
Anemia, nonspherocytic hemolytic, due to G6PD deficiency (CNSHA1)
Synonyms:
Hemolytic anemia due to G6PD deficiency; Favism, susceptibility to; Class I glucose-6-phosphate dehydrogenase deficiency; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0010480; MedGen: C2720289; Orphanet: 466026; OMIM: 300908

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004847252Subrahamanyam Lab, Department of Biochemistry, National Institute of Nutrition, Indian Council of Medical Research
no assertion criteria provided
uncertain significance
(Nov 1, 2023)
unknownresearch

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
South Asianunknownyes1not providednot providednot providednot providedresearch

Citations

PubMed

Coexistence of Severe Iron Deficiency Anemia in Adolescent Girls with Exonic Variants Linked to Membranopathies.

Dantham S, Gaddam I.

Indian J Pediatr. 2024 Jun;91(6):641. doi: 10.1007/s12098-024-05117-x. Epub 2024 Apr 9. No abstract available.

PubMed [citation]
PMID:
38592584

Details of each submission

From Subrahamanyam Lab, Department of Biochemistry, National Institute of Nutrition, Indian Council of Medical Research, SCV004847252.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1South Asian1not providednot providedresearch PubMed (1)

Description

The anemic individual's whole blood samples were sequenced at baseline, i.e. on enrollment into the study. Baseline Hb: 6.6 g/dl

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providedwhole bloodnot provided1not providednot providednot provided

Last Updated: Dec 7, 2024