GRCh37/hg19 8p23.3-11.21(chr8:158048-41600696)x3 AND not specified
- Germline classification:
- Pathogenic (1 submission)
- Review status:
- 1 star out of maximum of 4 starscriteria provided, single submitter
- Somatic classification
of clinical impact: - None
- Review status:
- (0/4) 0 stars out of maximum of 4 starsno assertion criteria provided
- Somatic classification
of oncogenicity: - None
- Review status:
- (0/4) 0 stars out of maximum of 4 starsno assertion criteria provided
- Record status:
- current
- Accession:
- RCV003986756.1
Allele description [Variation Report for GRCh37/hg19 8p23.3-11.21(chr8:158048-41600696)x3]
GRCh37/hg19 8p23.3-11.21(chr8:158048-41600696)x3
- Genes:
- AGPAT5:1-acylglycerol-3-phosphate O-acyltransferase 5 [Gene - OMIM - HGNC]
- ADAMDEC1:ADAM like decysin 1 [Gene - OMIM - HGNC]
- ADAM18:ADAM metallopeptidase domain 18 [Gene - OMIM - HGNC]
- ADAM28:ADAM metallopeptidase domain 28 [Gene - OMIM - HGNC]
- ADAM2:ADAM metallopeptidase domain 2 [Gene - OMIM - HGNC]
- ADAM32:ADAM metallopeptidase domain 32 [Gene - OMIM - HGNC]
- ADAM7:ADAM metallopeptidase domain 7 [Gene - OMIM - HGNC]
- ADAM9:ADAM metallopeptidase domain 9 [Gene - OMIM - HGNC]
- ASAH1-AS1:ASAH1 antisense RNA 1 [Gene - HGNC]
- ASH2L:ASH2 like, histone lysine methyltransferase complex subunit [Gene - OMIM - HGNC]
- ATP6V1B2:ATPase H+ transporting V1 subunit B2 [Gene - OMIM - HGNC]
- BAG4:BAG cochaperone 4 [Gene - OMIM - HGNC]
- BNIP3L:BCL2 interacting protein 3 like [Gene - OMIM - HGNC]
- BLK:BLK proto-oncogene, Src family tyrosine kinase [Gene - OMIM - HGNC]
- BRF2:BRF2 RNA polymerase III transcription initiation factor subunit [Gene - OMIM - HGNC]
- CNOT7:CCR4-NOT transcription complex subunit 7 [Gene - OMIM - HGNC]
- CLN8:CLN8 transmembrane ER and ERGIC protein [Gene - OMIM - HGNC]
- CSMD1:CUB and Sushi multiple domains 1 [Gene - OMIM - HGNC]
- DDHD2:DDHD domain containing 2 [Gene - OMIM - HGNC]
- DLC1:DLC1 Rho GTPase activating protein [Gene - OMIM - HGNC]
- DLGAP2:DLG associated protein 2 [Gene - OMIM - HGNC]
- EBF2:EBF transcription factor 2 [Gene - OMIM - HGNC]
- ERLIN2:ER lipid raft associated 2 [Gene - OMIM - HGNC]
- FBXO16:F-box protein 16 [Gene - OMIM - HGNC]
- FBXO25:F-box protein 25 [Gene - OMIM - HGNC]
- FHIP2B:FHF complex subunit HOOK interacting protein 2B [Gene - OMIM - HGNC]
- GATA4:GATA binding protein 4 [Gene - OMIM - HGNC]
- GFRA2:GDNF family receptor alpha 2 [Gene - OMIM - HGNC]
- GINS4:GINS complex subunit 4 [Gene - OMIM - HGNC]
- HR:HR lysine demethylase and nuclear receptor corepressor [Gene - OMIM - HGNC]
- HTRA4:HtrA serine peptidase 4 [Gene - OMIM - HGNC]
- LONRF1:LON peptidase N-terminal domain and ring finger 1 [Gene - HGNC]
- LSM1:LSM1 homolog, mRNA degradation associated [Gene - OMIM - HGNC]
- MAK16:MAK16 homolog [Gene - HGNC]
- NAT1:N-acetyltransferase 1 [Gene - OMIM - HGNC]
- NAT2:N-acetyltransferase 2 [Gene - OMIM - HGNC]
- ASAH1:N-acylsphingosine amidohydrolase 1 [Gene - OMIM - HGNC]
- NKX2-6:NK2 homeobox 6 [Gene - OMIM - HGNC]
- NKX3-1:NK3 homeobox 1 [Gene - OMIM - HGNC]
- NKX6-3:NK6 homeobox 3 [Gene - OMIM - HGNC]
- PDLIM2:PDZ and LIM domain 2 [Gene - OMIM - HGNC]
- PBK:PDZ binding kinase [Gene - OMIM - HGNC]
- PINX1:PIN2 (TERF1) interacting telomerase inhibitor 1 [Gene - OMIM - HGNC]
- PNMA2:PNMA family member 2 [Gene - OMIM - HGNC]
- R3HCC1:R3H domain and coiled-coil containing 1 [Gene - HGNC]
- RAB11FIP1:RAB11 family interacting protein 1 [Gene - OMIM - HGNC]
- RBPMS:RNA binding protein, mRNA processing factor [Gene - OMIM - HGNC]
- POLR3D:RNA polymerase III subunit D [Gene - OMIM - HGNC]
- RP1L1:RP1 like 1 [Gene - OMIM - HGNC]
- ARHGEF10:Rho guanine nucleotide exchange factor 10 [Gene - OMIM - HGNC]
- RHOBTB2:Rho related BTB domain containing 2 [Gene - OMIM - HGNC]
- SH2D4A:SH2 domain containing 4A [Gene - OMIM - HGNC]
- SOX7:SRY-box transcription factor 7 [Gene - OMIM - HGNC]
- TTI2:TELO2 interacting protein 2 [Gene - OMIM - HGNC]
- TM2D2:TM2 domain containing 2 [Gene - OMIM - HGNC]
- TNFRSF10A:TNF receptor superfamily member 10a [Gene - OMIM - HGNC]
- TNFRSF10B:TNF receptor superfamily member 10b [Gene - OMIM - HGNC]
- TNFRSF10C:TNF receptor superfamily member 10c [Gene - OMIM - HGNC]
- TNFRSF10D:TNF receptor superfamily member 10d [Gene - OMIM - HGNC]
- UBXN8:UBX domain protein 8 [Gene - OMIM - HGNC]
- VPS37A:VPS37A subunit of ESCRT-I [Gene - OMIM - HGNC]
- WRN:WRN RecQ like helicase [Gene - OMIM - HGNC]
- XKR5:XK related 5 [Gene - HGNC]
- XKR6:XK related 6 [Gene - HGNC]
- ADGRA2:adhesion G protein-coupled receptor A2 [Gene - OMIM - HGNC]
- ADRA1A:adrenoceptor alpha 1A [Gene - OMIM - HGNC]
- ADRB3:adrenoceptor beta 3 [Gene - OMIM - HGNC]
- ANGPT2:angiopoietin 2 [Gene - OMIM - HGNC]
- ANK1:ankyrin 1 [Gene - OMIM - HGNC]
- BMP1:bone morphogenetic protein 1 [Gene - OMIM - HGNC]
- BIN3:bridging integrator 3 [Gene - OMIM - HGNC]
- CTSB:cathepsin B [Gene - OMIM - HGNC]
- CCAR2:cell cycle and apoptosis regulator 2 [Gene - OMIM - HGNC]
- CDCA2:cell division cycle associated 2 [Gene - OMIM - HGNC]
- CHMP7:charged multivesicular body protein 7 [Gene - OMIM - HGNC]
- CHRNA2:cholinergic receptor nicotinic alpha 2 subunit [Gene - OMIM - HGNC]
- CSGALNACT1:chondroitin sulfate N-acetylgalactosaminyltransferase 1 [Gene - OMIM - HGNC]
- C8orf48:chromosome 8 open reading frame 48 [Gene - HGNC]
- C8orf58:chromosome 8 open reading frame 58 [Gene - HGNC]
- C8orf74:chromosome 8 open reading frame 74 [Gene - HGNC]
- CLDN23:claudin 23 [Gene - OMIM - HGNC]
- CLU:clusterin [Gene - OMIM - HGNC]
- CCDC25:coiled-coil domain containing 25 [Gene - OMIM - HGNC]
- DOCK5:dedicator of cytokinesis 5 [Gene - OMIM - HGNC]
- DEFA1:defensin alpha 1 [Gene - OMIM - HGNC]
- DEFA1B:defensin alpha 1B [Gene - HGNC]
- DEFA3:defensin alpha 3 [Gene - OMIM - HGNC]
- DEFA4:defensin alpha 4 [Gene - OMIM - HGNC]
- DEFA5:defensin alpha 5 [Gene - OMIM - HGNC]
- DEFA6:defensin alpha 6 [Gene - OMIM - HGNC]
- DEFB103A:defensin beta 103A [Gene - HGNC]
- DEFB103B:defensin beta 103B [Gene - OMIM - HGNC]
- DEFB104A:defensin beta 104A [Gene - HGNC]
- DEFB104B:defensin beta 104B [Gene - HGNC]
- DEFB105A:defensin beta 105A [Gene - HGNC]
- DEFB105B:defensin beta 105B [Gene - HGNC]
- DEFB106A:defensin beta 106A [Gene - HGNC]
- DEFB106B:defensin beta 106B [Gene - HGNC]
- DEFB107A:defensin beta 107A [Gene - HGNC]
- DEFB107B:defensin beta 107B [Gene - HGNC]
- DEFB130A:defensin beta 130A [Gene - HGNC]
- DEFB134:defensin beta 134 [Gene - HGNC]
- DEFB135:defensin beta 135 [Gene - HGNC]
- DEFB136:defensin beta 136 [Gene - HGNC]
- DEFB1:defensin beta 1 [Gene - OMIM - HGNC]
- DEFB4A:defensin beta 4A [Gene - OMIM - HGNC]
- DEFB4B:defensin beta 4B [Gene - HGNC]
- DMTN:dematin actin binding protein [Gene - OMIM - HGNC]
- DPYSL2:dihydropyrimidinase like 2 [Gene - OMIM - HGNC]
- DOK2:docking protein 2 [Gene - OMIM - HGNC]
- DUSP26:dual specificity phosphatase 26 [Gene - OMIM - HGNC]
- DUSP4:dual specificity phosphatase 4 [Gene - OMIM - HGNC]
- DCTN6:dynactin subunit 6 [Gene - OMIM - HGNC]
- EGR3:early growth response 3 [Gene - OMIM - HGNC]
- ENTPD4:ectonucleoside triphosphate diphosphohydrolase 4 [Gene - OMIM - HGNC]
- ELP3:elongator acetyltransferase complex subunit 3 [Gene - OMIM - HGNC]
- EPHX2:epoxide hydrolase 2 [Gene - OMIM - HGNC]
- ESCO2:establishment of sister chromatid cohesion N-acetyltransferase 2 [Gene - OMIM - HGNC]
- EIF4EBP1:eukaryotic translation initiation factor 4E binding protein 1 [Gene - OMIM - HGNC]
- ERI1:exoribonuclease 1 [Gene - OMIM - HGNC]
- EXTL3:exostosin like glycosyltransferase 3 [Gene - OMIM - HGNC]
- XPO7:exportin 7 [Gene - OMIM - HGNC]
- FAM167A:family with sequence similarity 167 member A [Gene - OMIM - HGNC]
- FAM86B1:family with sequence similarity 86 member B1 [Gene - OMIM - HGNC]
- FAM86B2:family with sequence similarity 86 member B2 [Gene - OMIM - HGNC]
- FDFT1:farnesyl-diphosphate farnesyltransferase 1 [Gene - OMIM - HGNC]
- FGL1:fibrinogen like 1 [Gene - OMIM - HGNC]
- FGF17:fibroblast growth factor 17 [Gene - OMIM - HGNC]
- FGF20:fibroblast growth factor 20 [Gene - OMIM - HGNC]
- FGFR1:fibroblast growth factor receptor 1 [Gene - OMIM - HGNC]
- FZD3:frizzled class receptor 3 [Gene - OMIM - HGNC]
- FUT10:fucosyltransferase 10 [Gene - OMIM - HGNC]
- GTF2E2:general transcription factor IIE subunit 2 [Gene - OMIM - HGNC]
- ERICH1:glutamate rich 1 [Gene - HGNC]
- GOT1L1:glutamic-oxaloacetic transaminase 1 like 1 [Gene - HGNC]
- GSR:glutathione-disulfide reductase [Gene - OMIM - HGNC]
- GPAT4:glycerol-3-phosphate acyltransferase 4 [Gene - OMIM - HGNC]
- GOLGA7:golgin A7 [Gene - OMIM - HGNC]
- GNRH1:gonadotropin releasing hormone 1 [Gene - OMIM - HGNC]
- HMBOX1:homeobox containing 1 [Gene - OMIM - HGNC]
- IDO1:indoleamine 2,3-dioxygenase 1 [Gene - OMIM - HGNC]
- IDO2:indoleamine 2,3-dioxygenase 2 [Gene - OMIM - HGNC]
- INTS10:integrator complex subunit 10 [Gene - OMIM - HGNC]
- INTS9:integrator complex subunit 9 [Gene - OMIM - HGNC]
- KBTBD11:kelch repeat and BTB domain containing 11 [Gene - OMIM - HGNC]
- KIF13B:kinesin family member 13B [Gene - OMIM - HGNC]
- LEPROTL1:leptin receptor overlapping transcript like 1 [Gene - OMIM - HGNC]
- LGI3:leucine rich repeat LGI family member 3 [Gene - OMIM - HGNC]
- LETM2:leucine zipper and EF-hand containing transmembrane protein 2 [Gene - OMIM - HGNC]
- LZTS1:leucine zipper tumor suppressor 1 [Gene - OMIM - HGNC]
- LPL:lipoprotein lipase [Gene - OMIM - HGNC]
- LINC03042:long intergenic non-protein coding RNA 3042 [Gene - HGNC]
- LOXL2:lysyl oxidase like 2 [Gene - OMIM - HGNC]
- MSR1:macrophage scavenger receptor 1 [Gene - OMIM - HGNC]
- MBOAT4:membrane bound O-acyltransferase domain containing 4 [Gene - OMIM - HGNC]
- MSRA:methionine sulfoxide reductase A [Gene - OMIM - HGNC]
- MIR124-1:microRNA 124-1 [Gene - OMIM - HGNC]
- MIR320A:microRNA 320a [Gene - OMIM - HGNC]
- MCPH1:microcephalin 1 [Gene - OMIM - HGNC]
- MTUS1:microtubule associated scaffold protein 1 [Gene - OMIM - HGNC]
- MICU3:mitochondrial calcium uptake family member 3 [Gene - OMIM - HGNC]
- MFHAS1:multifunctional ROCO family signaling regulator 1 [Gene - OMIM - HGNC]
- MYOM2:myomesin 2 [Gene - OMIM - HGNC]
- MTMR7:myotubularin related protein 7 [Gene - OMIM - HGNC]
- MTMR9:myotubularin related protein 9 [Gene - OMIM - HGNC]
- NEIL2:nei like DNA glycosylase 2 [Gene - OMIM - HGNC]
- NRG1:neuregulin 1 [Gene - OMIM - HGNC]
- NEFL:neurofilament light chain [Gene - OMIM - HGNC]
- NEFM:neurofilament medium chain [Gene - OMIM - HGNC]
- NUGGC:nuclear GTPase, germinal center associated [Gene - OMIM - HGNC]
- NSD3:nuclear receptor binding SET domain protein 3 [Gene - OMIM - HGNC]
- NPM2:nucleophosmin/nucleoplasmin 2 [Gene - OMIM - HGNC]
- NUDT18:nudix hydrolase 18 [Gene - OMIM - HGNC]
- PCM1:pericentriolar material 1 [Gene - OMIM - HGNC]
- PEBP4:phosphatidylethanolamine binding protein 4 [Gene - OMIM - HGNC]
- PLPP5:phospholipid phosphatase 5 [Gene - OMIM - HGNC]
- PHYHIP:phytanoyl-CoA 2-hydroxylase interacting protein [Gene - OMIM - HGNC]
- PIWIL2:piwi like RNA-mediated gene silencing 2 [Gene - OMIM - HGNC]
- PDGFRL:platelet derived growth factor receptor like [Gene - OMIM - HGNC]
- PSD3:pleckstrin and Sec7 domain containing 3 [Gene - OMIM - HGNC]
- PLEKHA2:pleckstrin homology domain containing A2 [Gene - OMIM - HGNC]
- KCNU1:potassium calcium-activated channel subfamily U member 1 [Gene - OMIM - HGNC]
- KCTD9:potassium channel tetramerization domain containing 9 [Gene - OMIM - HGNC]
- PNOC:prepronociceptin [Gene - OMIM - HGNC]
- PPP1R3B:protein phosphatase 1 regulatory subunit 3B [Gene - OMIM - HGNC]
- PPP2CB:protein phosphatase 2 catalytic subunit beta [Gene - OMIM - HGNC]
- PPP2R2A:protein phosphatase 2 regulatory subunit Balpha [Gene - OMIM - HGNC]
- PPP3CC:protein phosphatase 3 catalytic subunit gamma [Gene - OMIM - HGNC]
- PTK2B:protein tyrosine kinase 2 beta [Gene - OMIM - HGNC]
- PURG:purine rich element binding protein G [Gene - OMIM - HGNC]
- PLPBP:pyridoxal phosphate binding protein [Gene - OMIM - HGNC]
- REEP4:receptor accessory protein 4 [Gene - OMIM - HGNC]
- RNF122:ring finger protein 122 [Gene - OMIM - HGNC]
- SGCZ:sarcoglycan zeta [Gene - OMIM - HGNC]
- SCARA3:scavenger receptor class A member 3 [Gene - OMIM - HGNC]
- SCARA5:scavenger receptor class A member 5 [Gene - OMIM - HGNC]
- SFRP1:secreted frizzled related protein 1 [Gene - OMIM - HGNC]
- PRSS51:serine protease 51 [Gene - HGNC]
- PRSS55:serine protease 55 [Gene - OMIM - HGNC]
- SMIM18:small integral membrane protein 18 [Gene - HGNC]
- SLC18A1:solute carrier family 18 member A1 [Gene - OMIM - HGNC]
- SLC25A37:solute carrier family 25 member 37 [Gene - OMIM - HGNC]
- SLC35G5:solute carrier family 35 member G5 [Gene - OMIM - HGNC]
- SLC39A14:solute carrier family 39 member 14 [Gene - OMIM - HGNC]
- SLC7A2:solute carrier family 7 member 2 [Gene - OMIM - HGNC]
- SORBS3:sorbin and SH3 domain containing 3 [Gene - OMIM - HGNC]
- SPAG11A:sperm associated antigen 11A [Gene - HGNC]
- SPAG11B:sperm associated antigen 11B [Gene - OMIM - HGNC]
- STC1:stanniocalcin 1 [Gene - OMIM - HGNC]
- STMN4:stathmin 4 [Gene - OMIM - HGNC]
- STAR:steroidogenic acute regulatory protein [Gene - OMIM - HGNC]
- SARAF:store-operated calcium entry associated regulatory factor [Gene - OMIM - HGNC]
- SFTPC:surfactant protein C [Gene - OMIM - HGNC]
- TRMT9B:tRNA methyltransferase 9B (putative) [Gene - OMIM - HGNC]
- TNKS:tankyrase [Gene - OMIM - HGNC]
- TDRP:testis development related protein [Gene - OMIM - HGNC]
- TEX15:testis expressed 15, meiosis and synapsis associated [Gene - OMIM - HGNC]
- TCIM:transcriptional and immune response regulator [Gene - OMIM - HGNC]
- TACC1:transforming acidic coiled-coil containing protein 1 [Gene - OMIM - HGNC]
- TRIM35:tripartite motif containing 35 [Gene - OMIM - HGNC]
- TUSC3:tumor suppressor candidate 3 [Gene - OMIM - HGNC]
- USP17L1:ubiquitin specific peptidase 17 like family member 1 [Gene - HGNC]
- USP17L2:ubiquitin specific peptidase 17 like family member 2 [Gene - OMIM - HGNC]
- USP17L3:ubiquitin specific peptidase 17 like family member 3 [Gene - HGNC]
- USP17L4:ubiquitin specific peptidase 17 like family member 4 [Gene - HGNC]
- USP17L7:ubiquitin specific peptidase 17 like family member 7 [Gene - HGNC]
- USP17L8:ubiquitin specific peptidase 17 like family member 8 [Gene - HGNC]
- UNC5D:unc-5 netrin receptor D [Gene - OMIM - HGNC]
- ZDHHC2:zinc finger DHHC-type palmitoyltransferase 2 [Gene - OMIM - HGNC]
- ZMAT4:zinc finger matrin-type 4 [Gene - HGNC]
- ZNF395:zinc finger protein 395 [Gene - OMIM - HGNC]
- ZNF596:zinc finger protein 596 [Gene - HGNC]
- ZNF703:zinc finger protein 703 [Gene - OMIM - HGNC]
- ZNF705B:zinc finger protein 705B [Gene - HGNC]
- ZNF705D:zinc finger protein 705D [Gene - HGNC]
- ZNF705G:zinc finger protein 705G [Gene - HGNC]
- Variant type:
- copy number gain
- Cytogenetic location:
- 8p23.3-11.21
- Genomic location:
- Chr8: 158048 - 41600696 (on Assembly GRCh37)
- Preferred name:
- GRCh37/hg19 8p23.3-11.21(chr8:158048-41600696)x3
- HGVS:
- This HGVS expression did not pass validation
- Observations:
- 1
Condition(s)
- Synonyms:
- AllHighlyPenetrant
- Identifiers:
- MedGen: CN169374
Assertion and evidence details
Submission Accession | Submitter | Review Status (Assertion method) | Clinical Significance (Last evaluated) | Origin | Method | Citations |
---|---|---|---|---|---|---|
SCV004802885 | ARUP Laboratories, Cytogenetics and Genomic Microarray, ARUP Laboratories | criteria provided, single submitter (Constitutional Copy Number Variant Assertion Criteria) | Pathogenic | germline | clinical testing |
Summary from all submissions
Ethnicity | Origin | Affected | Individuals | Families | Chromosomes tested | Number Tested | Family history | Method |
---|---|---|---|---|---|---|---|---|
not provided | germline | unknown | 1 | not provided | not provided | not provided | not provided | clinical testing |
Details of each submission
From ARUP Laboratories, Cytogenetics and Genomic Microarray, ARUP Laboratories, SCV004802885.1
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | 1 | not provided | not provided | clinical testing | not provided |
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | germline | unknown | not provided | not provided | not provided | 1 | not provided | not provided | not provided |
Last Updated: Sep 1, 2024