NM_017534.6(MYH2):c.4424C>A (p.Ala1475Asp) AND Myopathy, proximal, and ophthalmoplegia

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: May 19, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003629197.2

Allele description [Variation Report for NM_017534.6(MYH2):c.4424C>A (p.Ala1475Asp)]

NM_017534.6(MYH2):c.4424C>A (p.Ala1475Asp)

Genes:

LOC126862500:BRD4-independent group 4 enhancer GRCh37_chr17:10427829-10429028 [Gene]
MYH2:myosin heavy chain 2 [Gene - OMIM - HGNC]
MYHAS:myosin heavy chain gene cluster antisense RNA [Gene - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

17p13.1

Genomic location:

Preferred name:

NM_017534.6(MYH2):c.4424C>A (p.Ala1475Asp)

HGVS:

NC_000017.11:g.10525564G>T
NG_013014.1:g.29137C>A
NM_001100112.2:c.4424C>A
NM_017534.6:c.4424C>AMANE SELECT
NP_001093582.1:p.Ala1475Asp
NP_060004.3:p.Ala1475Asp
NC_000017.10:g.10428881G>T
NM_017534.5:c.4424C>A

Protein change:

A1475D

Links:

dbSNP: rs938120515

NCBI 1000 Genomes Browser:

rs938120515

Molecular consequence:

NM_001100112.2:c.4424C>A - missense variant - [Sequence Ontology: SO:0001583]
NM_017534.6:c.4424C>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Myopathy, proximal, and ophthalmoplegia (CMYO6)
Synonyms:: Inclusion body myopathy 3; Myopathy with congenital joint contractures, ophthalmoplegia, and rimmed vacuoles; Inclusion body myopathy autosomal dominant; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0011577; MedGen: C1854106; Orphanet: 363677; Orphanet: 79091; OMIM: 605637

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004526132	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Uncertain significance (May 19, 2023)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004526132

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Uncertain significance
(May 19, 2023)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group, Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV004526132.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt MYH2 protein function. ClinVar contains an entry for this variant (Variation ID: 1307363). This variant has not been reported in the literature in individuals affected with MYH2-related conditions. This variant is not present in population databases (gnomAD no frequency). This sequence change replaces alanine, which is neutral and non-polar, with aspartic acid, which is acidic and polar, at codon 1475 of the MYH2 protein (p.Ala1475Asp).

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 20, 2024

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