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NM_001384140.1(PCDH15):c.2922C>G (p.Tyr974Ter) AND Autosomal recessive nonsyndromic hearing loss 23

Germline classification:
no classifications from unflagged records (1 submission)
Last evaluated:
Apr 30, 2024
Review status:
no classifications from unflagged records
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003476688.2

Allele description [Variation Report for NM_001384140.1(PCDH15):c.2922C>G (p.Tyr974Ter)]

NM_001384140.1(PCDH15):c.2922C>G (p.Tyr974Ter)

Gene:
PCDH15:protocadherin related 15 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q21.1
Genomic location:
Preferred name:
NM_001384140.1(PCDH15):c.2922C>G (p.Tyr974Ter)
HGVS:
  • NC_000010.11:g.53961839G>C
  • NG_009191.3:g.1672344C>G
  • NM_001142763.2:c.2937C>G
  • NM_001142764.2:c.2922C>G
  • NM_001142765.2:c.2709C>G
  • NM_001142766.2:c.2922C>G
  • NM_001142767.2:c.2811C>G
  • NM_001142768.2:c.2856C>G
  • NM_001142769.3:c.2958C>G
  • NM_001142770.3:c.2922C>G
  • NM_001142771.2:c.2937C>G
  • NM_001142772.2:c.2922C>G
  • NM_001142773.2:c.2856C>G
  • NM_001354404.2:c.2856C>G
  • NM_001354411.2:c.2943C>G
  • NM_001354420.2:c.2922C>G
  • NM_001354429.2:c.2922C>G
  • NM_001384140.1:c.2922C>GMANE SELECT
  • NM_033056.4:c.2922C>G
  • NP_001136235.1:p.Tyr979Ter
  • NP_001136236.1:p.Tyr974Ter
  • NP_001136237.1:p.Tyr903Ter
  • NP_001136238.1:p.Tyr974Ter
  • NP_001136239.1:p.Tyr937Ter
  • NP_001136240.1:p.Tyr952Ter
  • NP_001136241.1:p.Tyr986Ter
  • NP_001136242.1:p.Tyr974Ter
  • NP_001136243.1:p.Tyr979Ter
  • NP_001136244.1:p.Tyr974Ter
  • NP_001136245.1:p.Tyr952Ter
  • NP_001341333.1:p.Tyr952Ter
  • NP_001341340.1:p.Tyr981Ter
  • NP_001341349.1:p.Tyr974Ter
  • NP_001341358.1:p.Tyr974Ter
  • NP_001371069.1:p.Tyr974Ter
  • NP_149045.3:p.Tyr974Ter
  • NC_000010.10:g.55721599G>C
Protein change:
Y903*
Molecular consequence:
  • NM_001142763.2:c.2937C>G - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001142764.2:c.2922C>G - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001142765.2:c.2709C>G - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001142766.2:c.2922C>G - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001142767.2:c.2811C>G - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001142768.2:c.2856C>G - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001142769.3:c.2958C>G - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001142770.3:c.2922C>G - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001142771.2:c.2937C>G - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001142772.2:c.2922C>G - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001142773.2:c.2856C>G - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001354404.2:c.2856C>G - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001354411.2:c.2943C>G - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001354420.2:c.2922C>G - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001354429.2:c.2922C>G - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001384140.1:c.2922C>G - nonsense - [Sequence Ontology: SO:0001587]
  • NM_033056.4:c.2922C>G - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Autosomal recessive nonsyndromic hearing loss 23
Synonyms:
Deafness, autosomal recessive 23
Identifiers:
MONDO: MONDO:0012293; MedGen: C1836027; Orphanet: 90636; OMIM: 609533

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Assertion and evidence details

Help
No clinical assertions found. See "Flagged submissions" below.
Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Baylor Genetics, SCV004200825.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Flagged submissions

Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004200825Baylor Genetics
flagged submission
Reason: Other
Notes: Flagging candidate with reason of insufficient supporting evidence. This gene has been classified as having a limited gene-disease relationship by a ClinGen Expert Panel.

(ACMG Guidelines, 2015)		Likely pathogenic
(May 17, 2023) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Last Updated: Jul 23, 2024