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NM_001365088.1(SLC12A6):c.1931dup (p.Ile645fs) AND Agenesis of the corpus callosum with peripheral neuropathy

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Feb 25, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003472742.1

Allele description [Variation Report for NM_001365088.1(SLC12A6):c.1931dup (p.Ile645fs)]

NM_001365088.1(SLC12A6):c.1931dup (p.Ile645fs)

Gene:
SLC12A6:solute carrier family 12 member 6 [Gene - OMIM - HGNC]
Variant type:
Duplication
Cytogenetic location:
15q14
Genomic location:
Preferred name:
NM_001365088.1(SLC12A6):c.1931dup (p.Ile645fs)
HGVS:
  • NC_000015.10:g.34245300dup
  • NG_007951.1:g.97768dup
  • NM_001042494.2:c.1754dup
  • NM_001042495.2:c.1754dup
  • NM_001042496.2:c.1904dup
  • NM_001042497.2:c.1886dup
  • NM_001365088.1:c.1931dupMANE SELECT
  • NM_005135.2:c.1778dup
  • NM_133647.2:c.1931dup
  • NP_001035959.1:p.Ile586fs
  • NP_001035960.1:p.Ile586fs
  • NP_001035961.1:p.Ile636fs
  • NP_001035962.1:p.Ile630fs
  • NP_001352017.1:p.Ile645fs
  • NP_005126.1:p.Ile594fs
  • NP_598408.1:p.Ile645Asnfs
  • NP_598408.1:p.Ile645fs
  • LRG_270t1:c.1778dup
  • LRG_270t2:c.1928dup
  • LRG_270:g.97768dup
  • LRG_270p1:p.Ile594fs
  • LRG_270p2:p.Ile645Asnfs
  • NC_000015.9:g.34537501dup
  • NM_133647.1:c.1928dup
Protein change:
I586fs
Molecular consequence:
  • NM_001042494.2:c.1754dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001042495.2:c.1754dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001042496.2:c.1904dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001042497.2:c.1886dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001365088.1:c.1931dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_005135.2:c.1778dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_133647.2:c.1931dup - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Agenesis of the corpus callosum with peripheral neuropathy (ACCPN)
Synonyms:
Andermann syndrome; Charlevoix disease; Corpus callosum agenesis neuronopathy; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0000902; MedGen: C0795950; Orphanet: 1496; OMIM: 218000

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004201182Baylor Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely pathogenic
(Feb 25, 2023) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Baylor Genetics, SCV004201182.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 26, 2024