NM_000287.4(PEX6):c.2439dup (p.Arg814fs) AND Heimler syndrome 2

Germline classification:: Likely pathogenic (1 submission)
Last evaluated:: Aug 16, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003472106.1

Allele description [Variation Report for NM_000287.4(PEX6):c.2439dup (p.Arg814fs)]

NM_000287.4(PEX6):c.2439dup (p.Arg814fs)

Gene:

PEX6:peroxisomal biogenesis factor 6 [Gene - OMIM - HGNC]

Variant type:

Duplication

Cytogenetic location:

6p21.1

Genomic location:

Preferred name:

NM_000287.4(PEX6):c.2439dup (p.Arg814fs)

HGVS:

NC_000006.12:g.42965717dup
NG_008370.1:g.18531dup
NG_008396.1:g.9956dup
NM_000287.4:c.2439dupMANE SELECT
NM_001316313.2:c.2175dup
NP_000278.3:p.Arg814fs
NP_001303242.1:p.Arg726fs
NC_000006.11:g.42933455dup
NM_000287.3:c.2439dupG
NR_133009.2:n.2223dup

Protein change:

R726fs

Links:

dbSNP: rs1554126955

NCBI 1000 Genomes Browser:

rs1554126955

Molecular consequence:

NM_000287.4:c.2439dup - frameshift variant - [Sequence Ontology: SO:0001589]
NM_001316313.2:c.2175dup - frameshift variant - [Sequence Ontology: SO:0001589]
NR_133009.2:n.2223dup - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:: Heimler syndrome 2 (HMLR2)
Synonyms:: PEROXISOME BIOGENESIS DISORDER 4C
Identifiers:: MedGen: C4225267; Orphanet: 3220; OMIM: 616617

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004201603	Baylor Genetics	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely pathogenic (Aug 16, 2022)	unknown	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004201603

Baylor Genetics

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely pathogenic
(Aug 16, 2022)

unknown

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Baylor Genetics, SCV004201603.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Dec 30, 2023

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