NM_002618.4(PEX13):c.26C>G (p.Pro9Arg) AND Inborn genetic diseases

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jun 21, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003362747.2

Allele description [Variation Report for NM_002618.4(PEX13):c.26C>G (p.Pro9Arg)]

NM_002618.4(PEX13):c.26C>G (p.Pro9Arg)

Genes:

PEX13:peroxisomal biogenesis factor 13 [Gene - OMIM - HGNC]
PUS10:pseudouridine synthase 10 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2p15

Genomic location:

Preferred name:

NM_002618.4(PEX13):c.26C>G (p.Pro9Arg)

HGVS:

NC_000002.12:g.61017785C>G
NG_008665.1:g.5109C>G
NM_001322127.1:c.-623+223G>C
NM_002618.4:c.26C>GMANE SELECT
NM_144709.4:c.-16+223G>CMANE SELECT
NP_002609.1:p.Pro9Arg
NC_000002.11:g.61244920C>G
NM_002618.3:c.26C>G

Protein change:

P9R

Links:

dbSNP: rs764069625

NCBI 1000 Genomes Browser:

rs764069625

Molecular consequence:

NM_001322127.1:c.-623+223G>C - intron variant - [Sequence Ontology: SO:0001627]
NM_144709.4:c.-16+223G>C - intron variant - [Sequence Ontology: SO:0001627]
NM_002618.4:c.26C>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Inborn genetic diseases
Identifiers:: MeSH: D030342; MedGen: C0950123

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004054400	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Jun 21, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004054400

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Jun 21, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV004054400.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.26C>G (p.P9R) alteration is located in exon 1 (coding exon 1) of the PEX13 gene. This alteration results from a C to G substitution at nucleotide position 26, causing the proline (P) at amino acid position 9 to be replaced by an arginine (R). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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