NM_006030.4(CACNA2D2):c.3014G>A (p.Ser1005Asn) AND Inborn genetic diseases

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jun 29, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003356651.2

Allele description [Variation Report for NM_006030.4(CACNA2D2):c.3014G>A (p.Ser1005Asn)]

NM_006030.4(CACNA2D2):c.3014G>A (p.Ser1005Asn)

Genes:

LOC127898564:CYB561D2-LOC101928965 [Gene]
CACNA2D2:calcium voltage-gated channel auxiliary subunit alpha2delta 2 [Gene - OMIM - HGNC]
CYB561D2:cytochrome b561 family member D2 [Gene - OMIM - HGNC]
LOC101928965:uncharacterized LOC101928965 [Gene]

Variant type:

single nucleotide variant

Cytogenetic location:

3p21.31

Genomic location:

Preferred name:

NM_006030.4(CACNA2D2):c.3014G>A (p.Ser1005Asn)

HGVS:

NC_000003.12:g.50365440C>T
NG_034070.1:g.143805G>A
NG_099481.2:g.973C>T
NM_001005505.3:c.3014G>A
NM_001174051.3:c.3035G>A
NM_001291101.1:c.2807G>A
NM_001410768.1:c.3017G>A
NM_006030.4:c.3014G>AMANE SELECT
NP_001005505.1:p.Ser1005Asn
NP_001167522.1:p.Ser1012Asn
NP_001278030.1:p.Ser936Asn
NP_001397697.1:p.Ser1006Asn
NP_006021.2:p.Ser1005Asn
NC_000003.11:g.50402871C>T
NM_001174051.1:c.3035G>A
NR_111913.2:n.78C>T
NR_111914.2:n.78C>T
NR_183061.1:n.78C>T
NR_183062.1:n.78C>T
NR_183063.1:n.78C>T
NR_183064.1:n.78C>T
NR_183065.1:n.78C>T

Protein change:

S1005N

Molecular consequence:

NM_001005505.3:c.3014G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001174051.3:c.3035G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001291101.1:c.2807G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001410768.1:c.3017G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_006030.4:c.3014G>A - missense variant - [Sequence Ontology: SO:0001583]
NR_111913.2:n.78C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_111914.2:n.78C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_183061.1:n.78C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_183062.1:n.78C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_183063.1:n.78C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_183064.1:n.78C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_183065.1:n.78C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:: Inborn genetic diseases
Identifiers:: MeSH: D030342; MedGen: C0950123

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004062272	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Jun 29, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004062272

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Jun 29, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV004062272.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.3035G>A (p.S1012N) alteration is located in exon 36 (coding exon 36) of the CACNA2D2 gene. This alteration results from a G to A substitution at nucleotide position 3035, causing the serine (S) at amino acid position 1012 to be replaced by an asparagine (N). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 1, 2024

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