NM_144991.3(TSPEAR):c.1697A>G (p.Tyr566Cys) AND Inborn genetic diseases

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jun 30, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003352937.2

Allele description [Variation Report for NM_144991.3(TSPEAR):c.1697A>G (p.Tyr566Cys)]

NM_144991.3(TSPEAR):c.1697A>G (p.Tyr566Cys)

Genes:

LOC126653398:CDK7 strongly-dependent group 2 enhancer GRCh37_chr21:45928270-45929469 [Gene]
TSPEAR-AS1:TSPEAR antisense RNA 1 [Gene - HGNC]
TSPEAR:thrombospondin type laminin G domain and EAR repeats [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

21q22.3

Genomic location:

Preferred name:

NM_144991.3(TSPEAR):c.1697A>G (p.Tyr566Cys)

HGVS:

NC_000021.9:g.44509256T>C
NG_033806.1:g.207323A>G
NM_001272037.2:c.1493A>G
NM_144991.3:c.1697A>GMANE SELECT
NP_001258966.1:p.Tyr498Cys
NP_659428.2:p.Tyr566Cys
NC_000021.8:g.45929139T>C
NM_144991.2:c.1697A>G
NR_103707.1:n.1219T>C

Protein change:

Y498C

Links:

dbSNP: rs782088056

NCBI 1000 Genomes Browser:

rs782088056

Molecular consequence:

NM_001272037.2:c.1493A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_144991.3:c.1697A>G - missense variant - [Sequence Ontology: SO:0001583]
NR_103707.1:n.1219T>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:: Inborn genetic diseases
Identifiers:: MeSH: D030342; MedGen: C0950123

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004061773	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Jun 30, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004061773

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Jun 30, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV004061773.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.1697A>G (p.Y566C) alteration is located in exon 10 (coding exon 10) of the TSPEAR gene. This alteration results from a A to G substitution at nucleotide position 1697, causing the tyrosine (Y) at amino acid position 566 to be replaced by a cysteine (C). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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