NM_001145026.2(PTPRQ):c.4534_4536dup (p.Phe1512_Gln1513insPhe) AND Autosomal recessive nonsyndromic hearing loss 84A

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jul 6, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003239315.1

Allele description [Variation Report for NM_001145026.2(PTPRQ):c.4534_4536dup (p.Phe1512_Gln1513insPhe)]

NM_001145026.2(PTPRQ):c.4534_4536dup (p.Phe1512_Gln1513insPhe)

Gene:

PTPRQ:protein tyrosine phosphatase receptor type Q [Gene - OMIM - HGNC]

Variant type:

Duplication

Cytogenetic location:

12q21.31

Genomic location:

Preferred name:

NM_001145026.2(PTPRQ):c.4534_4536dup (p.Phe1512_Gln1513insPhe)

HGVS:

NC_000012.12:g.80588377_80588379dup
NG_034052.1:g.149032_149034dup
NM_001145026.2:c.4534_4536dupMANE SELECT
NP_001138498.1:p.Phe1512_Gln1513insPhe
NC_000012.11:g.80982156_80982158dup

Molecular consequence:

NM_001145026.2:c.4534_4536dup - inframe_insertion - [Sequence Ontology: SO:0001821]

Condition(s)

Name:: Autosomal recessive nonsyndromic hearing loss 84A
Synonyms:: Deafness, autosomal recessive 84; DEAFNESS, AUTOSOMAL RECESSIVE 84A; DEAFNESS, AUTOSOMAL RECESSIVE 84A, WITH VESTIBULAR DYSFUNCTION
Identifiers:: MONDO: MONDO:0013249; MedGen: C3150654; Orphanet: 90636; OMIM: 613391

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003936862	Department of Human Genetics, Hannover Medical School	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Jul 6, 2023)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003936862

Department of Human Genetics, Hannover Medical School

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Jul 6, 2023)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Department of Human Genetics, Hannover Medical School, SCV003936862.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Jul 8, 2023

ClinVar

Relating variation to medicine