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NM_020374.4(FERRY3):c.1360C>T (p.Arg454Ter) AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Apr 15, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003235375.2

Allele description [Variation Report for NM_020374.4(FERRY3):c.1360C>T (p.Arg454Ter)]

NM_020374.4(FERRY3):c.1360C>T (p.Arg454Ter)

Gene:
FERRY3:FERRY endosomal RAB5 effector complex subunit 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12p13.32
Genomic location:
Preferred name:
NM_020374.4(FERRY3):c.1360C>T (p.Arg454Ter)
Other names:
C12ORF4, ARG454TER
HGVS:
  • NC_000012.12:g.4500218G>A
  • NG_051648.1:g.43291C>T
  • NM_001304811.2:c.1360C>T
  • NM_001346153.2:c.1231C>T
  • NM_001346155.2:c.1231C>T
  • NM_001346156.2:c.841C>T
  • NM_001346157.2:c.712C>T
  • NM_001352962.2:c.508C>T
  • NM_020374.4:c.1360C>TMANE SELECT
  • NP_001291740.1:p.Arg454Ter
  • NP_001333082.1:p.Arg411Ter
  • NP_001333084.1:p.Arg411Ter
  • NP_001333085.1:p.Arg281Ter
  • NP_001333086.1:p.Arg238Ter
  • NP_001339891.1:p.Arg170Ter
  • NP_065107.1:p.Arg454Ter
  • NC_000012.11:g.4609384G>A
  • NM_020374.2:c.1360C>T
  • NM_020374.3:c.1360C>T
  • NR_144379.2:n.1339C>T
  • NR_144380.2:n.1012C>T
  • NR_144382.2:n.809C>T
Protein change:
R170*; ARG454TER
Links:
OMIM: 616082.0003; dbSNP: rs749969789
NCBI 1000 Genomes Browser:
rs749969789
Molecular consequence:
  • NR_144379.2:n.1339C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_144380.2:n.1012C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_144382.2:n.809C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NM_001304811.2:c.1360C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001346153.2:c.1231C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001346155.2:c.1231C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001346156.2:c.841C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001346157.2:c.712C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001352962.2:c.508C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_020374.4:c.1360C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003933250GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Pathogenic
(Apr 15, 2024)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV003933250.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Nonsense variant predicted to result in protein truncation or nonsense mediated decay in a gene for which loss of function is a known mechanism of disease; This variant is associated with the following publications: (PMID: 28097321)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024