NM_001371909.1(C10orf67):c.1570+4090T>C AND Pancreatic agenesis 2

Germline classification:: Pathogenic (1 submission)
Last evaluated:: Feb 12, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003126284.1

Allele description [Variation Report for NM_001371909.1(C10orf67):c.1570+4090T>C]

NM_001371909.1(C10orf67):c.1570+4090T>C

Genes:

C10orf67:chromosome 10 open reading frame 67 [Gene - HGNC]
LINC01552:long intergenic non-protein coding RNA 1552 [Gene]

Variant type:

single nucleotide variant

Cytogenetic location:

10p12.2

Genomic location:

Preferred name:

NM_001371909.1(C10orf67):c.1570+4090T>C

HGVS:

NC_000010.11:g.23219508A>G
NM_001365862.2:c.1573+4090T>C
NM_001371909.1:c.1570+4090T>CMANE SELECT
NC_000010.10:g.23508437A>G

Molecular consequence:

NM_001365862.2:c.1573+4090T>C - intron variant - [Sequence Ontology: SO:0001627]
NM_001371909.1:c.1570+4090T>C - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:: Pancreatic agenesis 2 (PAGEN2)
Synonyms:: PANCREATIC HYPOPLASIA, CONGENITAL 2
Identifiers:: MONDO: MONDO:0014406; MedGen: C4014737; Orphanet: 2805; OMIM: 615935

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003801358	Department of Human Genetics, Hannover Medical School	criteria provided, single submitter (ACMG Guidelines, 2015)	Pathogenic (Feb 12, 2023)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003801358

Department of Human Genetics, Hannover Medical School

criteria provided, single submitter

(ACMG Guidelines, 2015)

Pathogenic
(Feb 12, 2023)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Department of Human Genetics, Hannover Medical School, SCV003801358.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Feb 25, 2023

ClinVar

Relating variation to medicine