NM_006567.5(FARS2):c.80A>G (p.His27Arg) AND Inborn genetic diseases

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Nov 9, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002543746.2

Allele description [Variation Report for NM_006567.5(FARS2):c.80A>G (p.His27Arg)]

NM_006567.5(FARS2):c.80A>G (p.His27Arg)

Genes:

LOC126859565:CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:5368745-5369944 [Gene]
FARS2:phenylalanyl-tRNA synthetase 2, mitochondrial [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

6p25.1

Genomic location:

Preferred name:

NM_006567.5(FARS2):c.80A>G (p.His27Arg)

HGVS:

NC_000006.12:g.5368650A>G
NG_033003.2:g.112300A>G
NM_001318872.2:c.80A>G
NM_001374875.1:c.80A>G
NM_001374876.1:c.80A>G
NM_001374877.1:c.80A>G
NM_001374878.1:c.80A>G
NM_001374879.1:c.80A>G
NM_001375257.1:c.80A>G
NM_001375258.1:c.80A>G
NM_001375259.1:c.-84-35892A>G
NM_001375260.1:c.-340-27983A>G
NM_006567.3:c.80A>G
NM_006567.5:c.80A>GMANE SELECT
NP_001305801.1:p.His27Arg
NP_001361804.1:p.His27Arg
NP_001361805.1:p.His27Arg
NP_001361806.1:p.His27Arg
NP_001361807.1:p.His27Arg
NP_001361808.1:p.His27Arg
NP_001362186.1:p.His27Arg
NP_001362187.1:p.His27Arg
NP_006558.1:p.His27Arg
NC_000006.11:g.5368883A>G
NG_033003.1:g.112300A>G

Protein change:

H27R

Links:

dbSNP: rs537850422

NCBI 1000 Genomes Browser:

rs537850422

Molecular consequence:

NM_001375259.1:c.-84-35892A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001375260.1:c.-340-27983A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001318872.2:c.80A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001374875.1:c.80A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001374876.1:c.80A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001374877.1:c.80A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001374878.1:c.80A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001374879.1:c.80A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001375257.1:c.80A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001375258.1:c.80A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_006567.5:c.80A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Inborn genetic diseases
Identifiers:: MeSH: D030342; MedGen: C0950123

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003753392	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Nov 9, 2021)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003753392

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Nov 9, 2021)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV003753392.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.80A>G (p.H27R) alteration is located in exon 2 (coding exon 1) of the FARS2 gene. This alteration results from a A to G substitution at nucleotide position 80, causing the histidine (H) at amino acid position 27 to be replaced by an arginine (R). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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