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NM_000530.8(MPZ):c.199C>T (p.Arg67Cys) AND Charcot-Marie-Tooth disease, type I

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Oct 13, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002536920.10

Allele description [Variation Report for NM_000530.8(MPZ):c.199C>T (p.Arg67Cys)]

NM_000530.8(MPZ):c.199C>T (p.Arg67Cys)

Gene:
MPZ:myelin protein zero [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1q23.3
Genomic location:
Preferred name:
NM_000530.8(MPZ):c.199C>T (p.Arg67Cys)
HGVS:
  • NC_000001.11:g.161307293G>A
  • NG_008055.1:g.7680C>T
  • NM_000530.8:c.199C>TMANE SELECT
  • NM_001315491.2:c.199C>T
  • NP_000521.2:p.Arg67Cys
  • NP_001302420.1:p.Arg67Cys
  • LRG_256t1:c.199C>T
  • LRG_256:g.7680C>T
  • NC_000001.10:g.161277083G>A
  • NM_000530.6:c.199C>T
Protein change:
R67C
Links:
dbSNP: rs775361544
NCBI 1000 Genomes Browser:
rs775361544
Molecular consequence:
  • NM_000530.8:c.199C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001315491.2:c.199C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Charcot-Marie-Tooth disease, type I (CMT1)
Synonyms:
Charcot-Marie-Tooth Neuropathy Type 1; Hereditary Motor and Sensory Neuropathy 1; Charcot-Marie-Tooth, Type 1
Identifiers:
MONDO: MONDO:0019011; MedGen: C0751036

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003019894Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Uncertain significance
(Oct 13, 2022)
germlineclinical testing

PubMed (5)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Compound Charcot-Marie-Tooth disease: a kindred with severe hereditary neuropathy, pupil abnormalities and a novel MPZ mutation.

Young T, Shuey N, Partridge J, Bremner FD, Nicholl DJ.

J Neurol Neurosurg Psychiatry. 2013 Feb;84(2):234-6. doi: 10.1136/jnnp-2012-302469. Epub 2012 Nov 29. No abstract available.

PubMed [citation]
PMID:
23197742

Familial periodic paralysis and Charcot-Marie-Tooth disease in a 7-generation family.

Hisama FM.

Arch Neurol. 2005 Jan;62(1):135-8.

PubMed [citation]
PMID:
15642860
See all PubMed Citations (5)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV003019894.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (5)

Description

Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt MPZ protein function. ClinVar contains an entry for this variant (Variation ID: 637803). This missense change has been observed in individual(s) with Charcot-Marie-Tooth disease (PMID: 23197742). This variant is present in population databases (rs775361544, gnomAD 0.02%). This sequence change replaces arginine, which is basic and polar, with cysteine, which is neutral and slightly polar, at codon 67 of the MPZ protein (p.Arg67Cys). This variant disrupts the p.Arg67 amino acid residue in MPZ. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 15642860, 26392352, 32376792; Invitae). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 24, 2024