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NM_003052.5(SLC34A1):c.272_292del (p.Val91_Ala97del) AND multiple conditions

Germline classification:
Likely benign (1 submission)
Last evaluated:
Oct 27, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002503877.2

Allele description [Variation Report for NM_003052.5(SLC34A1):c.272_292del (p.Val91_Ala97del)]

NM_003052.5(SLC34A1):c.272_292del (p.Val91_Ala97del)

Gene:
SLC34A1:solute carrier family 34 member 1 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
5q35.3
Genomic location:
Preferred name:
NM_003052.5(SLC34A1):c.272_292del (p.Val91_Ala97del)
Other names:
p.Val91_Ala97del
HGVS:
  • NC_000005.10:g.177386233_177386253del
  • NG_016223.1:g.6803_6823del
  • NM_001167579.2:c.272_292del
  • NM_003052.5:c.272_292delMANE SELECT
  • NP_001161051.1:p.Val91_Ala97del
  • NP_003043.3:p.Val91_Ala97del
  • NC_000005.9:g.176813233_176813253del
  • NC_000005.9:g.176813234_176813254del
  • NM_003052.4:c.272_292del
  • NM_003052.4:c.272_292del21
  • NM_003052.4:c.272_292delTCCCCAAGCTGCGCCAGGCTG
Links:
OMIM: 182309.0009; dbSNP: rs876661296
NCBI 1000 Genomes Browser:
rs876661296
Molecular consequence:
  • NM_001167579.2:c.272_292del - inframe_deletion - [Sequence Ontology: SO:0001822]
  • NM_003052.5:c.272_292del - inframe_deletion - [Sequence Ontology: SO:0001822]
Functional consequence:
no known functional consequence

Condition(s)

Name:
Hypophosphatemic nephrolithiasis/osteoporosis 1
Identifiers:
MONDO: MONDO:0012850; MedGen: C2676786; Orphanet: 244305; OMIM: 612286
Name:
Fanconi renotubular syndrome 2 (FRTS2)
Identifiers:
MONDO: MONDO:0013247; MedGen: C3150652; OMIM: 613388
Name:
Hypercalcemia, infantile, 2 (HCINF2)
Identifiers:
MONDO: MONDO:0014851; MedGen: C4310473; Orphanet: 300547; OMIM: 616963

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002812474Fulgent Genetics, Fulgent Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely benign
(Oct 27, 2021) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Fulgent Genetics, Fulgent Genetics, SCV002812474.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 20, 2024