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NM_014251.3(SLC25A13):c.-115G>T AND multiple conditions

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Sep 16, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002502389.1

Allele description [Variation Report for NM_014251.3(SLC25A13):c.-115G>T]

NM_014251.3(SLC25A13):c.-115G>T

Genes:
LOC129998833:ATAC-STARR-seq lymphoblastoid silent region 18384 [Gene]
SLC25A13:solute carrier family 25 member 13 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7q21.3
Genomic location:
Preferred name:
NM_014251.3(SLC25A13):c.-115G>T
HGVS:
  • NC_000007.14:g.96322071C>A
  • NG_012247.2:g.5077G>T
  • NM_001160210.2:c.-115G>T
  • NM_014251.3:c.-115G>TMANE SELECT
  • NC_000007.13:g.95951383C>A
  • NM_014251.2:c.-115G>T
  • NR_027662.2:n.28G>T
Links:
dbSNP: rs543933601
NCBI 1000 Genomes Browser:
rs543933601
Molecular consequence:
  • NM_001160210.2:c.-115G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_014251.3:c.-115G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NR_027662.2:n.28G>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Neonatal intrahepatic cholestasis due to citrin deficiency
Synonyms:
Neonatal-onset citrullinemia type II; Neonatal intrahepatic cholestasis caused by citrin deficiency; Neonatal-onset citrullinemia type 2
Identifiers:
MONDO: MONDO:0011601; MedGen: C1853942; Orphanet: 247598; OMIM: 605814
Name:
Citrullinemia, type II, adult-onset (CTLN2)
Synonyms:
Adult-onset citrullinemia type 2
Identifiers:
MONDO: MONDO:0011326; MedGen: CN295299; Orphanet: 247585; OMIM: 603471

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002791823Fulgent Genetics, Fulgent Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Uncertain significance
(Sep 16, 2021) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Fulgent Genetics, Fulgent Genetics, SCV002791823.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 24, 2023