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NM_000506.5(F2):c.1726-59G>A AND multiple conditions

Germline classification:
Benign (1 submission)
Last evaluated:
Mar 29, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002492519.1

Allele description [Variation Report for NM_000506.5(F2):c.1726-59G>A]

NM_000506.5(F2):c.1726-59G>A

Gene:
F2:coagulation factor II, thrombin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11p11.2
Genomic location:
Preferred name:
NM_000506.5(F2):c.1726-59G>A
Other names:
19911A>G
HGVS:
  • NC_000011.10:g.46739206G>A
  • NG_008953.1:g.25014G>A
  • NM_000506.5:c.1726-59G>AMANE SELECT
  • LRG_551t1:c.1726-59G>A
  • LRG_551:g.25014G>A
  • NC_000011.9:g.46760756G>A
  • NM_000506.3:c.1726-59G>A
  • NM_000506.4:c.1726-59G>A
Links:
dbSNP: rs3136516
NCBI 1000 Genomes Browser:
rs3136516
Molecular consequence:
  • NM_000506.5:c.1726-59G>A - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:
Ischemic stroke
Synonyms:
CEREBROVASCULAR ACCIDENT; Ischemic stroke, susceptibility to
Identifiers:
MedGen: C0948008; OMIM: 601367; Human Phenotype Ontology: HP:0002140
Name:
Congenital prothrombin deficiency
Synonyms:
HYPOPROTHROMBINEMIA; Factor II deficiency; Hereditary factor II deficiency disease; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0013361; MedGen: C0272317; Orphanet: 325; OMIM: 613679
Name:
Pregnancy loss, recurrent, susceptibility to, 2 (RPRGL2)
Identifiers:
MONDO: MONDO:0013728; MedGen: C3280672; OMIM: 614390
Name:
Thrombophilia due to thrombin defect (THPH1)
Synonyms:
Thrombosis susceptibility; THROMBOPHILIA DUE TO FACTOR 2 DEFECT; Prothrombin-Related Thrombophilia (Factor II)
Identifiers:
MONDO: MONDO:0008559; MedGen: C3160733; OMIM: 188050

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002803536Fulgent Genetics, Fulgent Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Benign
(Mar 29, 2022) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Fulgent Genetics, Fulgent Genetics, SCV002803536.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024