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NM_000124.4(ERCC6):c.1659G>T (p.Lys553Asn) AND multiple conditions

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
May 18, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002478526.8

Allele description [Variation Report for NM_000124.4(ERCC6):c.1659G>T (p.Lys553Asn)]

NM_000124.4(ERCC6):c.1659G>T (p.Lys553Asn)

Gene:
ERCC6:ERCC excision repair 6, chromatin remodeling factor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q11.23
Genomic location:
Preferred name:
NM_000124.4(ERCC6):c.1659G>T (p.Lys553Asn)
HGVS:
  • NC_000010.11:g.49500564C>A
  • NG_009442.1:g.43538G>T
  • NM_000124.4:c.1659G>TMANE SELECT
  • NM_001346440.2:c.1659G>T
  • NP_000115.1:p.Lys553Asn
  • NP_001333369.1:p.Lys553Asn
  • LRG_465t1:c.1659G>T
  • LRG_465:g.43538G>T
  • NC_000010.10:g.50708610C>A
  • NM_000124.2:c.1659G>T
  • NM_000124.3:c.1659G>T
Protein change:
K553N
Links:
dbSNP: rs116373975
NCBI 1000 Genomes Browser:
rs116373975
Molecular consequence:
  • NM_000124.4:c.1659G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001346440.2:c.1659G>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
DE SANCTIS-CACCHIONE SYNDROME (ERCC6)
Synonyms:
Xerodermic idiocy
Identifiers:
MONDO: MONDO:0010217; MedGen: C0265201; OMIM: 278800
Name:
Cerebrooculofacioskeletal syndrome 1 (COFS1)
Synonyms:
Cerebro-oculo-facio-skeletal syndrome 1
Identifiers:
MONDO: MONDO:0008955; MedGen: C0220722; OMIM: 214150
Name:
Cockayne syndrome type 2 (CSB)
Synonyms:
Cockayne syndrome B; Cockayne syndrome type 2; Cockayne Syndrome, Type II
Identifiers:
MONDO: MONDO:0019570; MedGen: C0751038; Orphanet: 191; OMIM: 133540
Name:
UV-sensitive syndrome 1 (UVSS1)
Identifiers:
MONDO: MONDO:0010909; MedGen: C3551173; Orphanet: 178338; OMIM: 600630
Name:
Age related macular degeneration 5
Identifiers:
MONDO: MONDO:0013409; MedGen: C3151063; OMIM: 613761
Name:
Premature ovarian failure 11 (POF11)
Identifiers:
MONDO: MONDO:0014843; MedGen: C4310783; OMIM: 616946
Name:
Lung cancer
Synonyms:
Lung cancer, somatic; Malignant tumor of lung
Identifiers:
MONDO: MONDO:0008903; MedGen: C0242379; OMIM: 211980

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000611387Fulgent Genetics, Fulgent Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Uncertain significance
(May 18, 2022) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Fulgent Genetics, Fulgent Genetics, SCV000611387.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 24, 2024