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NM_002335.4(LRP5):c.533G>A (p.Arg178Gln) AND multiple conditions

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Apr 12, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002476598.1

Allele description [Variation Report for NM_002335.4(LRP5):c.533G>A (p.Arg178Gln)]

NM_002335.4(LRP5):c.533G>A (p.Arg178Gln)

Gene:
LRP5:LDL receptor related protein 5 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q13.2
Genomic location:
Preferred name:
NM_002335.4(LRP5):c.533G>A (p.Arg178Gln)
HGVS:
  • NC_000011.10:g.68357694G>A
  • NG_015835.2:g.50055G>A
  • NM_001291902.2:c.-1233G>A
  • NM_002335.4:c.533G>AMANE SELECT
  • NP_002326.2:p.Arg178Gln
  • NC_000011.9:g.68125162G>A
Protein change:
R178Q
Links:
dbSNP: rs183377804
NCBI 1000 Genomes Browser:
rs183377804
Molecular consequence:
  • NM_001291902.2:c.-1233G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_002335.4:c.533G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Bone mineral density quantitative trait locus 1 (BMND1)
Identifiers:
MedGen: C1866079; OMIM: 601884
Name:
Exudative vitreoretinopathy 4 (EVR4)
Identifiers:
MONDO: MONDO:0011151; MedGen: C1866176; Orphanet: 891; OMIM: 601813
Name:
Exudative vitreoretinopathy 1 (EVR1)
Synonyms:
Criswick-Schepens syndrome; FEVR, AUTOSOMAL DOMINANT; Familial exudative vitreoretinopathy, autosomal dominant
Identifiers:
MONDO: MONDO:0007589; MedGen: C1851402; Orphanet: 891; Orphanet: 90050; OMIM: 133780
Name:
Worth disease
Synonyms:
Osteosclerosis, autosomal dominant; Endosteal hyperostosis, autosomal dominant; Endosteal hyperostosis, Worth type; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007764; MedGen: C0432273; OMIM: 144750
Name:
Autosomal dominant osteopetrosis 1 (OPTA1)
Synonyms:
OSTEOPETROSIS, AUTOSOMAL DOMINANT, TYPE I
Identifiers:
MONDO: MONDO:0011877; MedGen: C1843330; Orphanet: 2783; OMIM: 607634
Name:
Osteoporosis with pseudoglioma (OPPG)
Synonyms:
Osteogenesis imperfecta ocular form; Pseudoglioma with bone fragility
Identifiers:
MONDO: MONDO:0009820; MedGen: C0432252; Orphanet: 2788; OMIM: 259770
Name:
Osteoporosis
Identifiers:
MONDO: MONDO:0005298; MedGen: C0029456; OMIM: 166710; Human Phenotype Ontology: HP:0000939
Name:
Polycystic liver disease 4 with or without kidney cysts
Identifiers:
MONDO: MONDO:0044327; MedGen: C4693479; OMIM: 617875

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002779563Fulgent Genetics, Fulgent Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Uncertain significance
(Apr 12, 2022) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Fulgent Genetics, Fulgent Genetics, SCV002779563.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024