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NM_000545.8(HNF1A):c.1501+1G>A AND multiple conditions

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Sep 9, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002475980.3

Allele description [Variation Report for NM_000545.8(HNF1A):c.1501+1G>A]

NM_000545.8(HNF1A):c.1501+1G>A

Gene:
HNF1A:HNF1 homeobox A [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12q24.31
Genomic location:
Preferred name:
NM_000545.8(HNF1A):c.1501+1G>A
Other names:
NM_000545.6(HNF1A):c.1501+1G>A
HGVS:
  • NC_000012.12:g.120997666G>A
  • NG_011731.2:g.23921G>A
  • NM_000545.8:c.1501+1G>AMANE SELECT
  • NM_001306179.2:c.1501+1G>A
  • NM_001406915.1:c.1309+924G>A
  • LRG_522:g.23921G>A
  • NC_000012.11:g.121435469G>A
  • NM_000545.6:c.1501+1G>A
Links:
dbSNP: rs1131692182
NCBI 1000 Genomes Browser:
rs1131692182
Molecular consequence:
  • NM_001406915.1:c.1309+924G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000545.8:c.1501+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001306179.2:c.1501+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]

Condition(s)

Name:
Diabetes mellitus type 1 (T1D)
Synonyms:
Type I diabetes mellitus
Identifiers:
MONDO: MONDO:0005147; MedGen: C0011854; OMIM: 222100; Human Phenotype Ontology: HP:0100651
Name:
Type 1 diabetes mellitus 20 (T1D20)
Synonyms:
Diabetes mellitus, insulin-dependent, 20
Identifiers:
MONDO: MONDO:0012919; MedGen: C2675866; OMIM: 612520
Name:
Maturity-onset diabetes of the young type 3
Synonyms:
Diabetes mellitus MODY type 3; MODY hepatocyte nuclear factor-1-alpha related; MODY type 3; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0010894; MedGen: C1838100; Orphanet: 552; OMIM: 600496
Name:
Type 2 diabetes mellitus
Synonyms:
DIABETES MELLITUS, TYPE 2, PROTECTION AGAINST; Type II diabetes mellitus; Diabetes mellitus, noninsulin-dependent, late onset
Identifiers:
MONDO: MONDO:0005148; MeSH: D003924; MedGen: C0011860; OMIM: 125853; Human Phenotype Ontology: HP:0005978
Name:
Hepatic adenomas, familial
Synonyms:
LIVER CELL ADENOMAS, FAMILIAL; HEPATIC ADENOMA, SOMATIC
Identifiers:
MONDO: MONDO:0007718; MedGen: C1840646; OMIM: 142330
Name:
Nonpapillary renal cell carcinoma
Identifiers:
MONDO: MONDO:0007763; MedGen: CN074294; Orphanet: 422526; OMIM: 144700

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002785200Fulgent Genetics, Fulgent Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Pathogenic
(Sep 9, 2021) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Fulgent Genetics, Fulgent Genetics, SCV002785200.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024