NM_001130698.2(TRPC3):c.2216T>C (p.Leu739Pro) AND Spinocerebellar ataxia type 41

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Nov 10, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002463422.1

Allele description [Variation Report for NM_001130698.2(TRPC3):c.2216T>C (p.Leu739Pro)]

NM_001130698.2(TRPC3):c.2216T>C (p.Leu739Pro)

Gene:

TRPC3:transient receptor potential cation channel subfamily C member 3 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

4q27

Genomic location:

Preferred name:

NM_001130698.2(TRPC3):c.2216T>C (p.Leu739Pro)

HGVS:

NC_000004.12:g.121904359A>G
NG_030368.1:g.52396T>C
NG_030368.2:g.52701T>C
NM_001130698.2:c.2216T>CMANE SELECT
NM_001366479.2:c.2216T>C
NM_003305.2:c.1997T>C
NP_001124170.1:p.Leu739Pro
NP_001353408.1:p.Leu739Pro
NP_003296.1:p.Leu666Pro
NC_000004.11:g.122825514A>G

Protein change:

L666P

Molecular consequence:

NM_001130698.2:c.2216T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001366479.2:c.2216T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_003305.2:c.1997T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Spinocerebellar ataxia type 41
Identifiers:: MONDO: MONDO:0014626; MedGen: C4225158; Orphanet: 458798; OMIM: 616410

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002757863	Institute of Human Genetics, Clinical Exome/Genome Diagnostics Group, University Hospital Bonn	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Nov 10, 2022)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002757863

Institute of Human Genetics, Clinical Exome/Genome Diagnostics Group, University Hospital Bonn

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Nov 10, 2022)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Institute of Human Genetics, Clinical Exome/Genome Diagnostics Group, University Hospital Bonn, SCV002757863.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Dec 3, 2022

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